Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H8R34_RS03270 Genome accession   NZ_CP084082
Coordinates   638343..638891 (+) Length   182 a.a.
NCBI ID   WP_002869474.1    Uniprot ID   -
Organism   Campylobacter jejuni strain MS2058     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 633343..643891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8R34_RS03235 (H8R34_000574) - 633534..633959 (+) 426 WP_255005525.1 N-acetyltransferase -
  H8R34_RS03240 - 634023..634642 (+) 620 Protein_630 NAD(P)H-dependent oxidoreductase -
  H8R34_RS03245 (H8R34_000575) - 634642..635247 (+) 606 WP_002869471.1 NAD(P)H-dependent oxidoreductase -
  H8R34_RS03250 (H8R34_000576) pgsA 635372..635908 (+) 537 WP_002869472.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  H8R34_RS03255 (H8R34_000577) rseP 635905..637011 (+) 1107 WP_002869473.1 RIP metalloprotease RseP -
  H8R34_RS03260 - 637004..637870 (+) 867 WP_002859152.1 VirK family antimicrobial peptide resistance protein -
  H8R34_RS03265 (H8R34_000578) rpsF 637957..638334 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  H8R34_RS03270 (H8R34_000579) ssb 638343..638891 (+) 549 WP_002869474.1 single-stranded DNA-binding protein Machinery gene
  H8R34_RS03275 (H8R34_000580) rpsR 638902..639162 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  H8R34_RS03280 (H8R34_000581) lon 639222..641597 (-) 2376 WP_002852988.1 endopeptidase La -
  H8R34_RS03285 (H8R34_000582) - 641614..642261 (-) 648 WP_002860191.1 outer membrane protein assembly factor BamD -
  H8R34_RS03290 (H8R34_000583) fliW 642422..642811 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  H8R34_RS03295 (H8R34_000584) proC 642811..643542 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  H8R34_RS03300 (H8R34_000585) ctsT 643539..643841 (+) 303 WP_002875928.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20569.47 Da        Isoelectric Point: 5.0431

>NTDB_id=534028 H8R34_RS03270 WP_002869474.1 638343..638891(+) (ssb) [Campylobacter jejuni strain MS2058]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQSPQ
HEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=534028 H8R34_RS03270 WP_002869474.1 638343..638891(+) (ssb) [Campylobacter jejuni strain MS2058]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGTTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAAGCT
ATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAGAGAAACCAAAGCCCACAA
CACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.068

96.703

0.368
  ssb Vibrio cholerae strain A1552

37.5

96.703

0.363