Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   H8R34_RS00675 Genome accession   NZ_CP084082
Coordinates   134106..134879 (+) Length   257 a.a.
NCBI ID   WP_002859984.1    Uniprot ID   -
Organism   Campylobacter jejuni strain MS2058     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 129106..139879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8R34_RS00660 - 129955..131889 (-) 1935 WP_002852122.1 ribonuclease R family protein -
  H8R34_RS00665 (H8R34_000156) ilvC 132008..133030 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  H8R34_RS00670 - 133034..134116 (+) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  H8R34_RS00675 (H8R34_000157) dprA 134106..134879 (+) 774 WP_002859984.1 DNA-processing protein DprA Machinery gene
  H8R34_RS00680 (H8R34_000158) dprB 134876..135259 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  H8R34_RS00685 - 135288..136127 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  H8R34_RS00690 (H8R34_000159) msrA 136303..136800 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  H8R34_RS00695 (H8R34_000160) ppa 136842..137360 (-) 519 WP_002867724.1 inorganic diphosphatase -
  H8R34_RS00700 (H8R34_000161) adk 137370..137948 (-) 579 WP_002859580.1 adenylate kinase -
  H8R34_RS00705 aspS 137945..139696 (-) 1752 WP_255005437.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28848.61 Da        Isoelectric Point: 6.4874

>NTDB_id=534020 H8R34_RS00675 WP_002859984.1 134106..134879(+) (dprA) [Campylobacter jejuni strain MS2058]
MASEILPDEFLELFQDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=534020 H8R34_RS00675 WP_002859984.1 134106..134879(+) (dprA) [Campylobacter jejuni strain MS2058]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAGCTTTTTCAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.054

100

0.981
  dprA Helicobacter pylori 26695

49.167

93.385

0.459