Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Regulator
Locus tag   HMPREF1038_RS09490 Genome accession   NC_018630
Coordinates   1764660..1765280 (-) Length   206 a.a.
NCBI ID   WP_000839908.1    Uniprot ID   A0A0B7M636
Organism   Streptococcus pneumoniae gamPNI0373     
Function   fratricide immunity (predicted from homology)   
Competence regulation

Genomic Context

Location: 1759660..1770280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF1038_RS09465 (HMPREF1038_01930) recA 1760037..1761203 (-) 1167 WP_001085463.1 recombinase RecA Machinery gene
  HMPREF1038_RS09470 (HMPREF1038_01931) cinA 1761258..1762514 (-) 1257 WP_000642709.1 competence/damage-inducible protein A Machinery gene
  HMPREF1038_RS09475 (HMPREF1038_01932) brpA 1762599..1763615 (-) 1017 WP_001844932.1 biofilm formation/cell division transcriptional regulator BrpA -
  HMPREF1038_RS09480 (HMPREF1038_01933) - 1763623..1764141 (-) 519 WP_000455537.1 GNAT family N-acetyltransferase -
  HMPREF1038_RS09485 (HMPREF1038_01934) tsaE 1764131..1764574 (-) 444 WP_000288232.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  HMPREF1038_RS09490 (HMPREF1038_01935) comM 1764660..1765280 (-) 621 WP_000839908.1 hypothetical protein Regulator
  HMPREF1038_RS09495 (HMPREF1038_01936) - 1765663..1766526 (-) 864 WP_001844931.1 helix-turn-helix domain-containing protein -
  HMPREF1038_RS09500 (HMPREF1038_01937) - 1766872..1768887 (+) 2016 WP_001844930.1 DUF1430 domain-containing protein -
  HMPREF1038_RS09505 (HMPREF1038_01938) - 1768889..1769521 (+) 633 WP_000571415.1 ABC transporter ATP-binding protein -
  HMPREF1038_RS13585 (HMPREF1038_01939) - 1769662..1769940 (+) 279 WP_000712962.1 hypothetical protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23552.72 Da        Isoelectric Point: 10.1254

>NTDB_id=53367 HMPREF1038_RS09490 WP_000839908.1 1764660..1765280(-) (comM) [Streptococcus pneumoniae gamPNI0373]
MKSMRILFLLALIQISLSSCFLWKECILSFKQSTAFFIGSMVFVSGICAGVNYLYTRKQEVHSVLASKKSVKLFYSMLLL
INLLGAVLVLSDNLFIKNTLQQELVDFLLPSFFFLFGLDLLIFLPLKKYVRDFLAMLDRKKTVLVTILATLLFLRNPMTI
VSLLIYIGLGLFFAAYLVPNSVKKEVSFYGHIFRDLVLVIVTLIFF

Nucleotide


Download         Length: 621 bp        

>NTDB_id=53367 HMPREF1038_RS09490 WP_000839908.1 1764660..1765280(-) (comM) [Streptococcus pneumoniae gamPNI0373]
ATGAAATCAATGAGAATCTTATTTTTGTTAGCTTTAATTCAAATCAGTTTGAGTAGCTGTTTCTTATGGAAGGAATGCAT
CTTGTCCTTTAAACAAAGTACAGCTTTTTTCATCGGAAGCATGGTTTTCGTTTCAGGAATCTGTGCTGGAGTAAATTATC
TTTATACCCGTAAGCAAGAAGTCCATAGTGTCCTAGCCAGTAAGAAGTCGGTGAAGCTTTTTTACAGTATGTTACTCTTA
ATTAATTTGTTAGGAGCTGTTCTTGTTTTGTCAGATAACTTGTTCATCAAAAATACGCTGCAGCAAGAATTAGTTGACTT
TTTATTGCCATCCTTCTTTTTCCTATTTGGGCTAGATTTGCTGATTTTTTTACCCTTGAAAAAATACGTGCGCGATTTTC
TTGCTATGCTGGACAGAAAAAAGACAGTGTTGGTGACTATTTTAGCAACACTTCTTTTCTTAAGAAATCCAATGACCATT
GTCTCACTTCTGATTTATATTGGACTGGGCTTGTTTTTTGCAGCCTATCTTGTCCCAAATTCGGTTAAGAAGGAAGTTTC
CTTTTATGGTCATATTTTCCGAGATCTTGTATTGGTCATTGTTACGCTCATTTTCTTTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B7M636

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Streptococcus pneumoniae D39

100

100

1
  comM Streptococcus pneumoniae R6

100

100

1
  comM Streptococcus pneumoniae TIGR4

100

100

1
  comM Streptococcus mitis NCTC 12261

38.974

94.66

0.369
  comM Streptococcus mitis SK321

38.974

94.66

0.369

Multiple sequence alignment