Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   HMPREF1038_RS09110 Genome accession   NC_018630
Coordinates   1708300..1709226 (-) Length   308 a.a.
NCBI ID   WP_001291293.1    Uniprot ID   -
Organism   Streptococcus pneumoniae gamPNI0373     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1703300..1714226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF1038_RS09090 (HMPREF1038_01852) treR 1704424..1705134 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  HMPREF1038_RS09095 (HMPREF1038_01853) - 1705167..1705970 (-) 804 WP_014947348.1 ABC transporter ATP-binding protein -
  HMPREF1038_RS13265 (HMPREF1038_01854) - 1705983..1706860 (-) 878 Protein_1739 ABC transporter permease -
  HMPREF1038_RS09105 (HMPREF1038_01856) - 1706905..1707681 (-) 777 Protein_1740 ABC transporter substrate-binding protein -
  HMPREF1038_RS09110 (HMPREF1038_01859) amiF 1708300..1709226 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator
  HMPREF1038_RS09115 (HMPREF1038_01860) amiE 1709237..1710304 (-) 1068 WP_000159554.1 ABC transporter ATP-binding protein Regulator
  HMPREF1038_RS09120 (HMPREF1038_01861) amiD 1710313..1711239 (-) 927 WP_000103697.1 oligopeptide ABC transporter permease OppC Regulator
  HMPREF1038_RS09125 (HMPREF1038_01862) amiC 1711239..1712735 (-) 1497 WP_000759902.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34796.85 Da        Isoelectric Point: 6.6224

>NTDB_id=53358 HMPREF1038_RS09110 WP_001291293.1 1708300..1709226(-) (amiF) [Streptococcus pneumoniae gamPNI0373]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGDIIFDGQKINGKKSRE
QAAELIRRIQMIFQDPAASLNERATVDYIISEGLYNHRLFKDEEERKEKVQNIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQALLSAVPIPDPILERKKVLKVYDPSQHDYETDKPSMVEIRPGHYVWANQAELARYQKGLN

Nucleotide


Download         Length: 927 bp        

>NTDB_id=53358 HMPREF1038_RS09110 WP_001291293.1 1708300..1709226(-) (amiF) [Streptococcus pneumoniae gamPNI0373]
ATGTCTGAAAAATTAGTAGAAATCAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
TGCTAACTTCTTTATCAACAAGGGAGAAACTTTCTCGCTTGTAGGTGAGTCCGGTAGTGGGAAAACAACTATTGGTCGTG
CTATCATCGGTCTAAATGATACAAGTAATGGAGATATCATTTTTGATGGTCAAAAGATTAATGGTAAGAAATCGCGTGAA
CAAGCTGCGGAATTGATTCGTCGAATCCAGATGATTTTCCAAGACCCTGCCGCAAGTTTGAATGAACGTGCGACTGTTGA
TTATATTATTTCTGAAGGTCTTTACAATCACCGTTTATTTAAGGATGAAGAAGAACGTAAAGAGAAAGTTCAAAATATTA
TCCGTGAAGTAGGTCTTCTTGCTGAGCACTTGACTCGTTACCCTCATGAATTCTCAGGCGGTCAACGTCAACGTATCGGT
ATTGCCCGTGCCTTGGTCATGCAACCAGACTTTGTTATTGCAGATGAGCCAATTTCAGCCTTGGACGTTTCTGTACGTGC
CCAAGTCTTGAACTTGCTCAAAAAATTCCAAAAAGAGCTCGGCCTGACCTATCTCTTCATCGCCCATGACTTGTCGGTTG
TTCGCTTTATTTCAGATCGTATCGCAGTTATTTACAAGGGTGTTATTGTAGAGGTTGCAGAAACAGAAGAATTGTTTAAC
AATCCAATTCACCCATATACTCAAGCCTTGCTTTCAGCGGTACCAATCCCAGATCCAATCTTGGAACGTAAGAAGGTCTT
GAAGGTTTACGACCCAAGTCAACACGACTATGAGACTGATAAGCCATCTATGGTAGAAATCCGTCCAGGTCACTATGTTT
GGGCGAACCAAGCCGAATTGGCACGTTATCAAAAAGGACTAAACTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

85.574

99.026

0.847
  amiF Streptococcus salivarius strain HSISS4

85.574

99.026

0.847
  amiF Streptococcus thermophilus LMD-9

85.246

99.026

0.844

Multiple sequence alignment