Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   HMPREF1038_RS09090 Genome accession   NC_018630
Coordinates   1704424..1705134 (+) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A062WVH4
Organism   Streptococcus pneumoniae gamPNI0373     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1699424..1710134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF1038_RS09075 (HMPREF1038_01849) - 1700079..1700327 (-) 249 WP_000364990.1 YneF family protein -
  HMPREF1038_RS09080 (HMPREF1038_01850) treC 1700469..1702094 (-) 1626 WP_000171203.1 alpha,alpha-phosphotrehalase -
  HMPREF1038_RS09085 (HMPREF1038_01851) treP 1702272..1704239 (-) 1968 WP_000514352.1 PTS system trehalose-specific EIIBC component -
  HMPREF1038_RS09090 (HMPREF1038_01852) treR 1704424..1705134 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  HMPREF1038_RS09095 (HMPREF1038_01853) - 1705167..1705970 (-) 804 WP_014947348.1 ABC transporter ATP-binding protein -
  HMPREF1038_RS13265 (HMPREF1038_01854) - 1705983..1706860 (-) 878 Protein_1739 ABC transporter permease -
  HMPREF1038_RS09105 (HMPREF1038_01856) - 1706905..1707681 (-) 777 Protein_1740 ABC transporter substrate-binding protein -
  HMPREF1038_RS09110 (HMPREF1038_01859) amiF 1708300..1709226 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=53357 HMPREF1038_RS09090 WP_000760673.1 1704424..1705134(+) (treR) [Streptococcus pneumoniae gamPNI0373]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=53357 HMPREF1038_RS09090 WP_000760673.1 1704424..1705134(+) (treR) [Streptococcus pneumoniae gamPNI0373]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACGGACTATCTGGATATGGAACTCATCCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGGCGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAAAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062WVH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593

Multiple sequence alignment