Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   JQN63_RS30130 Genome accession   NZ_CP069318
Coordinates   6580235..6580828 (+) Length   197 a.a.
NCBI ID   WP_203400124.1    Uniprot ID   -
Organism   Delftia lacustris strain R54     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6575235..6585828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQN63_RS30110 (JQN63_30115) sucD 6576225..6577118 (+) 894 WP_016449394.1 succinate--CoA ligase subunit alpha -
  JQN63_RS30115 (JQN63_30120) - 6577284..6577976 (+) 693 WP_203400123.1 TerC family protein -
  JQN63_RS30120 (JQN63_30125) - 6578205..6579053 (+) 849 WP_239009540.1 PP2C family protein-serine/threonine phosphatase -
  JQN63_RS30125 (JQN63_30130) - 6579302..6580012 (+) 711 WP_017405118.1 FHA domain-containing protein -
  JQN63_RS30130 (JQN63_30135) pilE 6580235..6580828 (+) 594 WP_203400124.1 pilin Machinery gene
  JQN63_RS30135 (JQN63_30140) - 6580891..6581679 (+) 789 WP_203400125.1 pilus assembly protein -
  JQN63_RS30140 (JQN63_30145) moaC 6581733..6582203 (-) 471 WP_203400126.1 cyclic pyranopterin monophosphate synthase MoaC -
  JQN63_RS30145 (JQN63_30150) - 6582356..6583981 (+) 1626 WP_047328056.1 M48 family metalloprotease -
  JQN63_RS30150 (JQN63_30155) - 6583955..6584302 (-) 348 WP_012202791.1 phage holin family protein -
  JQN63_RS30155 (JQN63_30160) - 6584455..6584913 (-) 459 WP_016449386.1 hypothetical protein -
  JQN63_RS30160 (JQN63_30165) - 6585048..6585788 (-) 741 WP_016449385.1 TerC family protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 20233.23 Da        Isoelectric Point: 8.0963

>NTDB_id=533502 JQN63_RS30130 WP_203400124.1 6580235..6580828(+) (pilE) [Delftia lacustris strain R54]
MKRSIQQGFTLIELMIVVAIIGILAAVALPAYQDYTVRAKVSEAVIAGSSAKSALAEGFQSDGVTGLNGVAKAINITPFA
QKASKYVLNYCVFPTDTGGVPTGADCAPFADGAENWVISVAVAATAGNGIPTTLNGKVFNLLPNVQKVKPTAALQGAVDW
ACTSENNVAATQRSLGNNGKPAAADAMPAKYMPAECR

Nucleotide


Download         Length: 594 bp        

>NTDB_id=533502 JQN63_RS30130 WP_203400124.1 6580235..6580828(+) (pilE) [Delftia lacustris strain R54]
ATGAAGCGTTCCATCCAGCAAGGTTTTACCTTGATCGAATTGATGATCGTTGTGGCGATCATCGGCATCTTGGCAGCGGT
TGCGCTGCCGGCTTATCAGGATTACACGGTCCGAGCCAAGGTTTCTGAAGCAGTTATCGCCGGATCCTCTGCGAAAAGTG
CATTGGCTGAAGGTTTTCAATCGGATGGAGTAACTGGGCTAAATGGAGTGGCCAAAGCAATCAACATCACGCCATTCGCA
CAGAAAGCATCTAAGTACGTCCTCAACTATTGTGTTTTTCCTACTGATACTGGAGGTGTTCCCACCGGTGCAGATTGCGC
CCCATTTGCAGATGGTGCAGAAAACTGGGTTATTTCTGTCGCAGTAGCTGCCACAGCAGGCAATGGTATTCCCACCACAT
TGAATGGCAAGGTTTTTAACCTGCTCCCCAATGTTCAAAAGGTCAAGCCGACGGCAGCTCTTCAAGGTGCAGTTGACTGG
GCATGCACAAGTGAAAATAACGTAGCAGCCACACAGCGCTCCTTGGGAAATAATGGCAAGCCAGCTGCTGCTGATGCCAT
GCCAGCCAAGTACATGCCCGCCGAGTGCCGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Pilin (bacterial filament) (Pilin)

(37-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

48.792

100

0.513
  pilA2 Legionella pneumophila str. Paris

36.979

97.462

0.36