Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JQC82_RS00040 Genome accession   NZ_CP069282
Coordinates   10186..10788 (+) Length   200 a.a.
NCBI ID   WP_003641634.1    Uniprot ID   A0A0G9GV16
Organism   Lactiplantibacillus plantarum strain KM2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5186..15788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQC82_RS00030 gyrA 6676..9228 (+) 2553 WP_047672423.1 DNA gyrase subunit A -
  JQC82_RS00035 rpsF 9850..10149 (+) 300 WP_003637271.1 30S ribosomal protein S6 -
  JQC82_RS00040 ssb 10186..10788 (+) 603 WP_003641634.1 single-stranded DNA-binding protein Machinery gene
  JQC82_RS00045 rpsR 10827..11063 (+) 237 WP_003641635.1 30S ribosomal protein S18 -
  JQC82_RS00050 - 11244..13256 (+) 2013 WP_003643610.1 DHH family phosphoesterase -
  JQC82_RS00055 rplI 13269..13721 (+) 453 WP_003641637.1 50S ribosomal protein L9 -
  JQC82_RS00060 dnaB 13737..15164 (+) 1428 WP_047672431.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21700.07 Da        Isoelectric Point: 4.7453

>NTDB_id=533287 JQC82_RS00040 WP_003641634.1 10186..10788(+) (ssb) [Lactiplantibacillus plantarum strain KM2]
MINRTILVGRLTRDPELRYTNGGAAVATFTIAVNRQFTNQNGEREADFISCVIWRKAAENFANFTHKGSLVGIDGRIQTR
NYENQQGVRVYVTEVVVENFSLLESRAESERHQSANGGSGNNNYNNGNSNYNNNNNGYSNQGQNAAPQQSSANNNNPFGN
GNTGNASSAAPSSSANNNNQADPFANNGDQIDISDDDLPF

Nucleotide


Download         Length: 603 bp        

>NTDB_id=533287 JQC82_RS00040 WP_003641634.1 10186..10788(+) (ssb) [Lactiplantibacillus plantarum strain KM2]
ATGATTAACCGTACAATTCTTGTTGGCCGACTGACAAGAGATCCGGAATTACGTTACACGAATGGTGGTGCCGCCGTCGC
GACGTTCACTATTGCCGTAAACCGTCAATTCACGAATCAAAATGGGGAACGTGAAGCAGATTTCATTAGTTGCGTCATTT
GGCGTAAAGCTGCTGAAAATTTTGCGAACTTTACTCATAAAGGTTCACTTGTTGGTATCGATGGCCGGATTCAAACCCGG
AACTACGAAAACCAACAAGGGGTACGTGTTTACGTTACAGAAGTTGTCGTTGAAAACTTCTCATTATTAGAATCACGGGC
AGAGTCTGAACGTCATCAGTCTGCCAATGGTGGTAGTGGTAATAACAATTACAACAATGGTAATTCGAATTACAACAACA
ATAATAATGGGTATAGTAATCAAGGCCAAAATGCGGCTCCTCAACAATCATCAGCGAATAACAATAACCCATTTGGTAAT
GGTAATACTGGTAATGCTAGCAGTGCGGCACCATCAAGCAGTGCTAACAACAATAATCAGGCTGACCCATTCGCTAATAA
TGGCGATCAAATTGATATCTCGGATGATGATTTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0G9GV16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

63

100

0.63
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.5

100

0.535