Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   U722_RS04630 Genome accession   NC_023073
Coordinates   942294..942941 (+) Length   215 a.a.
NCBI ID   WP_015388495.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens LFB112     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 937294..947941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U722_RS04615 (U722_04820) glpD 937463..939130 (+) 1668 WP_003155341.1 glycerol-3-phosphate dehydrogenase -
  U722_RS04620 (U722_04825) - 939270..941012 (+) 1743 WP_024085062.1 phospho-sugar mutase -
  U722_RS04625 (U722_04830) - 941158..942294 (+) 1137 WP_024085063.1 GAF domain-containing sensor histidine kinase -
  U722_RS04630 (U722_04835) vraR 942294..942941 (+) 648 WP_015388495.1 response regulator Regulator
  U722_RS04635 (U722_04840) - 942938..943462 (+) 525 WP_024085064.1 NADPH-dependent FMN reductase -
  U722_RS04640 (U722_04845) - 943476..943718 (-) 243 WP_003155335.1 YhdB family protein -
  U722_RS04645 (U722_04850) - 943910..944233 (+) 324 WP_003155332.1 DUF3889 domain-containing protein -
  U722_RS04650 (U722_04855) - 944276..945730 (-) 1455 WP_003155330.1 LysM peptidoglycan-binding domain-containing protein -
  U722_RS04655 (U722_04860) nsrR 945909..946343 (-) 435 WP_003155328.1 nitric oxide-sensing transcriptional repressor NsrR -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 23957.41 Da        Isoelectric Point: 5.9575

>NTDB_id=53320 U722_RS04630 WP_015388495.1 942294..942941(+) (vraR) [Bacillus amyloliquefaciens LFB112]
MKIVIADDHHVVRKGLRYFFATQEDIEVVGEASTGAEALQQAEKTEPDIILMDLSMPDMDGIEAAKIAAERFPDISIVVL
TSYSDQEHVIPALKAGAKAYQLKDAQPDDLVKTLREVYSGRYRLSADIVPHVLTHMVQDDQDKEKYYQLTPREKDVLQEI
AKGKSNKEIAAALFISEKTVKTHVSNLLSKLNLSDRTQAALYAVKYNVLGKAVKS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=53320 U722_RS04630 WP_015388495.1 942294..942941(+) (vraR) [Bacillus amyloliquefaciens LFB112]
ATGAAAATTGTGATTGCTGATGATCATCATGTTGTCCGCAAAGGACTGCGCTATTTCTTCGCCACTCAGGAAGACATTGA
AGTTGTCGGTGAGGCGTCCACCGGTGCTGAAGCGCTTCAGCAAGCTGAAAAGACGGAGCCGGACATCATTCTGATGGATT
TATCAATGCCTGATATGGACGGCATAGAAGCGGCAAAAATTGCGGCTGAACGATTTCCGGACATCAGTATCGTCGTTTTG
ACGAGCTATTCTGATCAGGAGCACGTCATTCCCGCCCTTAAAGCCGGCGCAAAAGCGTATCAGCTGAAAGACGCTCAGCC
CGATGATTTAGTGAAAACGCTCCGGGAAGTGTATTCCGGACGTTACCGGCTGTCGGCGGATATTGTGCCTCACGTGCTGA
CCCATATGGTTCAGGATGATCAGGATAAGGAAAAATATTATCAGCTGACCCCCCGTGAAAAAGATGTTCTTCAAGAAATA
GCCAAAGGAAAAAGCAATAAGGAAATTGCGGCGGCCCTGTTTATTTCAGAAAAAACAGTGAAGACCCACGTGTCCAATCT
GCTGTCAAAGCTGAATCTTTCCGATCGGACGCAGGCGGCATTGTATGCGGTAAAATATAATGTTTTGGGAAAGGCGGTAA
AATCATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-203)

Response regulator receiver domain (Response_reg)

(3-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

43.81

97.674

0.428
  degU Bacillus subtilis subsp. subtilis str. 168

38.356

100

0.391

Multiple sequence alignment