Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JQC90_RS04310 Genome accession   NZ_CP069219
Coordinates   910169..910564 (+) Length   131 a.a.
NCBI ID   WP_001829977.1    Uniprot ID   A0A4Q9W3V8
Organism   Staphylococcus epidermidis strain Z0118SE0272     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 905169..915564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQC90_RS04285 - 906588..906992 (+) 405 WP_001829924.1 F0F1 ATP synthase subunit epsilon -
  JQC90_RS04290 - 907141..907374 (+) 234 WP_002456242.1 DUF1146 family protein -
  JQC90_RS04295 murA 907484..908749 (+) 1266 WP_001829978.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  JQC90_RS04300 fabZ 908783..909220 (+) 438 WP_001829953.1 3-hydroxyacyl-ACP dehydratase FabZ -
  JQC90_RS04305 - 909538..909978 (-) 441 WP_001829935.1 YwpF-like family protein -
  JQC90_RS04310 ssb 910169..910564 (+) 396 WP_001829977.1 single-stranded DNA-binding protein Machinery gene
  JQC90_RS04315 - 910952..911611 (+) 660 WP_001829904.1 transglycosylase family protein -
  JQC90_RS04320 tenA 911896..912585 (+) 690 WP_001829894.1 thiaminase II -
  JQC90_RS04325 thiD 912578..913399 (+) 822 WP_001832736.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  JQC90_RS04330 thiM 913392..914180 (+) 789 WP_001829971.1 hydroxyethylthiazole kinase -
  JQC90_RS04335 thiE 914186..914824 (+) 639 WP_002505076.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15158.08 Da        Isoelectric Point: 5.2661

>NTDB_id=533053 JQC90_RS04310 WP_001829977.1 910169..910564(+) (ssb) [Staphylococcus epidermidis strain Z0118SE0272]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDINEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=533053 JQC90_RS04310 WP_001829977.1 910169..910564(+) (ssb) [Staphylococcus epidermidis strain Z0118SE0272]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATATTAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q9W3V8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

73.282

100

0.733
  ssb Staphylococcus aureus MW2

72.519

100

0.725