Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JQC88_RS03705 Genome accession   NZ_CP069215
Coordinates   798866..799261 (+) Length   131 a.a.
NCBI ID   WP_002457121.1    Uniprot ID   A0A7H5C5S7
Organism   Staphylococcus epidermidis strain Z0118SE0269     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 793866..804261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQC88_RS03680 - 795285..795689 (+) 405 WP_002447782.1 F0F1 ATP synthase subunit epsilon -
  JQC88_RS03685 - 795838..796071 (+) 234 WP_002456242.1 DUF1146 family protein -
  JQC88_RS03690 murA 796181..797446 (+) 1266 WP_001829978.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  JQC88_RS03695 fabZ 797480..797917 (+) 438 WP_001829953.1 3-hydroxyacyl-ACP dehydratase FabZ -
  JQC88_RS03700 - 798235..798675 (-) 441 WP_001829935.1 YwpF-like family protein -
  JQC88_RS03705 ssb 798866..799261 (+) 396 WP_002457121.1 single-stranded DNA-binding protein Machinery gene
  JQC88_RS03710 - 799649..800308 (+) 660 WP_001829904.1 transglycosylase family protein -
  JQC88_RS03715 tenA 800592..801281 (+) 690 WP_002495291.1 thiaminase II -
  JQC88_RS03720 thiD 801274..802095 (+) 822 WP_002495290.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  JQC88_RS03725 thiM 802088..802876 (+) 789 WP_001829971.1 hydroxyethylthiazole kinase -
  JQC88_RS03730 thiE 802882..803520 (+) 639 WP_002505076.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15159.02 Da        Isoelectric Point: 5.2661

>NTDB_id=533016 JQC88_RS03705 WP_002457121.1 798866..799261(+) (ssb) [Staphylococcus epidermidis strain Z0118SE0269]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=533016 JQC88_RS03705 WP_002457121.1 798866..799261(+) (ssb) [Staphylococcus epidermidis strain Z0118SE0269]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H5C5S7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

74.046

100

0.74
  ssb Staphylococcus aureus MW2

73.282

100

0.733