Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   JOF24_RS17820 Genome accession   NZ_CP069214
Coordinates   3652791..3652910 (+) Length   39 a.a.
NCBI ID   WP_015240778.1    Uniprot ID   -
Organism   Bacillus velezensis strain GUAL210     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3647791..3657910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOF24_RS17795 - 3648228..3648656 (-) 429 WP_060673887.1 DUF1934 domain-containing protein -
  JOF24_RS17800 - 3648810..3649322 (+) 513 Protein_3476 bacteriocin biosynthesis protein AlbG -
  JOF24_RS17805 - 3649329..3650036 (-) 708 WP_061890880.1 hypothetical protein -
  JOF24_RS17810 - 3650076..3651431 (-) 1356 WP_015418438.1 YncE family protein -
  JOF24_RS17815 rapF 3651662..3652807 (+) 1146 WP_203249408.1 tetratricopeptide repeat protein Regulator
  JOF24_RS17820 phrF 3652791..3652910 (+) 120 WP_015240778.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  JOF24_RS17825 - 3653108..3653311 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  JOF24_RS17830 - 3653325..3653528 (+) 204 WP_007407641.1 hypothetical protein -
  JOF24_RS17835 - 3653563..3653748 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  JOF24_RS17840 - 3653934..3654215 (+) 282 WP_045209208.1 hypothetical protein -
  JOF24_RS17845 - 3654259..3654771 (+) 513 WP_060673881.1 stage II sporulation protein M -
  JOF24_RS17850 - 3655362..3655580 (-) 219 WP_060673879.1 LuxR C-terminal-related transcriptional regulator -
  JOF24_RS17855 speB 3655748..3656620 (-) 873 WP_007407646.1 agmatinase -
  JOF24_RS17860 speE 3656679..3657509 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4281.16 Da        Isoelectric Point: 10.0233

>NTDB_id=533002 JOF24_RS17820 WP_015240778.1 3652791..3652910(+) (phrF) [Bacillus velezensis strain GUAL210]
MKLKYKLALTCLAISTVFVSADIASAPKHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=533002 JOF24_RS17820 WP_015240778.1 3652791..3652910(+) (phrF) [Bacillus velezensis strain GUAL210]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAATAAGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
GAAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

74.074

69.231

0.513
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462