Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   JOF24_RS16890 Genome accession   NZ_CP069214
Coordinates   3467398..3468087 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain GUAL210     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3462398..3473087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOF24_RS16855 - 3462596..3463078 (-) 483 WP_015418332.1 flagellar protein FlgN -
  JOF24_RS16860 flgM 3463093..3463359 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  JOF24_RS16865 - 3463429..3463848 (-) 420 WP_015418333.1 TIGR03826 family flagellar region protein -
  JOF24_RS16870 comFC 3463922..3464611 (-) 690 WP_196493397.1 phosphoribosyltransferase family protein Machinery gene
  JOF24_RS16875 - 3464617..3464901 (-) 285 WP_003151389.1 competence protein ComFB -
  JOF24_RS16880 comFA 3464959..3466344 (-) 1386 WP_061890854.1 DEAD/DEAH box helicase Machinery gene
  JOF24_RS16885 - 3466452..3467300 (-) 849 WP_003151387.1 DegV family protein -
  JOF24_RS16890 degU 3467398..3468087 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  JOF24_RS16895 degS 3468164..3469327 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  JOF24_RS16900 - 3469550..3470197 (+) 648 WP_007614107.1 YigZ family protein -
  JOF24_RS16905 - 3470202..3471416 (+) 1215 WP_014419013.1 LCP family protein -
  JOF24_RS16910 - 3471506..3472582 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=532996 JOF24_RS16890 WP_003219701.1 3467398..3468087(-) (degU) [Bacillus velezensis strain GUAL210]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=532996 JOF24_RS16890 WP_003219701.1 3467398..3468087(-) (degU) [Bacillus velezensis strain GUAL210]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAACGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATTCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGAGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1