Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   JOF24_RS16870 Genome accession   NZ_CP069214
Coordinates   3463922..3464611 (-) Length   229 a.a.
NCBI ID   WP_196493397.1    Uniprot ID   -
Organism   Bacillus velezensis strain GUAL210     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3458922..3469611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOF24_RS16835 fliW 3459013..3459444 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  JOF24_RS16840 - 3459474..3460043 (-) 570 WP_007407476.1 DUF6470 family protein -
  JOF24_RS16845 flgL 3460134..3461051 (-) 918 WP_015418330.1 flagellar hook-associated protein FlgL -
  JOF24_RS16850 flgK 3461063..3462580 (-) 1518 WP_015418331.1 flagellar hook-associated protein FlgK -
  JOF24_RS16855 - 3462596..3463078 (-) 483 WP_015418332.1 flagellar protein FlgN -
  JOF24_RS16860 flgM 3463093..3463359 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  JOF24_RS16865 - 3463429..3463848 (-) 420 WP_015418333.1 TIGR03826 family flagellar region protein -
  JOF24_RS16870 comFC 3463922..3464611 (-) 690 WP_196493397.1 phosphoribosyltransferase family protein Machinery gene
  JOF24_RS16875 - 3464617..3464901 (-) 285 WP_003151389.1 competence protein ComFB -
  JOF24_RS16880 comFA 3464959..3466344 (-) 1386 WP_061890854.1 DEAD/DEAH box helicase Machinery gene
  JOF24_RS16885 - 3466452..3467300 (-) 849 WP_003151387.1 DegV family protein -
  JOF24_RS16890 degU 3467398..3468087 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  JOF24_RS16895 degS 3468164..3469327 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25245.83 Da        Isoelectric Point: 8.0779

>NTDB_id=532994 JOF24_RS16870 WP_196493397.1 3463922..3464611(-) (comFC) [Bacillus velezensis strain GUAL210]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFSAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=532994 JOF24_RS16870 WP_196493397.1 3463922..3464611(-) (comFC) [Bacillus velezensis strain GUAL210]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTATATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTTCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598