Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   LA346_RS05145 Genome accession   NZ_CP083627
Coordinates   960116..960886 (+) Length   256 a.a.
NCBI ID   WP_000616167.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain FDAARGOS_1508     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 955116..965886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA346_RS05125 (LA346_05125) - 956631..957068 (+) 438 WP_000076479.1 CoA-binding protein -
  LA346_RS05130 (LA346_05130) - 957109..957762 (+) 654 WP_224208834.1 hypothetical protein -
  LA346_RS05135 (LA346_05135) - 957791..958801 (-) 1011 WP_000009158.1 YeiH family protein -
  LA346_RS05140 (LA346_05140) - 958950..960119 (+) 1170 WP_000366345.1 pyridoxal phosphate-dependent aminotransferase -
  LA346_RS05145 (LA346_05145) recO 960116..960886 (+) 771 WP_000616167.1 DNA repair protein RecO Machinery gene
  LA346_RS05150 (LA346_05150) plsX 960883..961875 (+) 993 WP_000717453.1 phosphate acyltransferase PlsX -
  LA346_RS05155 (LA346_05155) - 961881..962114 (+) 234 WP_000136447.1 acyl carrier protein -
  LA346_RS05160 (LA346_05160) - 962151..962450 (+) 300 Protein_977 transposase family protein -
  LA346_RS05165 (LA346_05165) blpU 962653..962883 (+) 231 WP_001093487.1 bacteriocin-like peptide BlpU -
  LA346_RS10840 - 962886..963011 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  LA346_RS05170 (LA346_05170) - 963422..963616 (+) 195 WP_000756776.1 hypothetical protein -
  LA346_RS05175 (LA346_05175) comR 963637..964530 (+) 894 WP_000343888.1 XRE family transcriptional regulator Regulator
  LA346_RS05180 (LA346_05180) - 965073..965369 (+) 297 WP_000837726.1 uberolysin/carnocyclin family circular bacteriocin -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29788.29 Da        Isoelectric Point: 5.8959

>NTDB_id=532934 LA346_RS05145 WP_000616167.1 960116..960886(+) (recO) [Streptococcus pneumoniae strain FDAARGOS_1508]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQNLTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDKRRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=532934 LA346_RS05145 WP_000616167.1 960116..960886(+) (recO) [Streptococcus pneumoniae strain FDAARGOS_1508]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAAATTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATAAGAGACGTTGTCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAATTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(4-72)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

98.828

100

0.988