Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   JOS67_RS22700 Genome accession   NZ_CP069197
Coordinates   1434515..1436560 (-) Length   681 a.a.
NCBI ID   WP_203347961.1    Uniprot ID   -
Organism   Vibrio diabolicus strain SLV18     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1429515..1441560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOS67_RS22680 (JOS67_22685) - 1429959..1430060 (-) 102 Protein_1281 LuxR C-terminal-related transcriptional regulator -
  JOS67_RS22685 (JOS67_22690) - 1430080..1431267 (-) 1188 WP_203347492.1 EAL domain-containing response regulator -
  JOS67_RS22690 (JOS67_22695) ylqF 1431946..1432890 (+) 945 WP_005395264.1 ribosome biogenesis GTPase YlqF -
  JOS67_RS22695 (JOS67_22700) cqsA 1433231..1434412 (+) 1182 WP_161444694.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  JOS67_RS22700 (JOS67_22705) cqsS 1434515..1436560 (-) 2046 WP_203347961.1 response regulator Regulator
  JOS67_RS22705 (JOS67_22710) - 1436928..1437545 (+) 618 WP_203347493.1 HAD family hydrolase -
  JOS67_RS22710 (JOS67_22715) - 1437632..1438180 (-) 549 WP_005398196.1 GNAT family N-acetyltransferase -
  JOS67_RS22715 (JOS67_22720) - 1438453..1439577 (+) 1125 WP_005398197.1 acyl-CoA desaturase -
  JOS67_RS22720 (JOS67_22725) dcuC 1439933..1441300 (+) 1368 WP_005398199.1 anaerobic C4-dicarboxylate transporter DcuC -

Sequence

Protein


Download         Length: 681 a.a.        Molecular weight: 78121.57 Da        Isoelectric Point: 5.4982

>NTDB_id=532849 JOS67_RS22700 WP_203347961.1 1434515..1436560(-) (cqsS) [Vibrio diabolicus strain SLV18]
MDSIRKVYQYAEPNLTLVGWMGFLGFPLYYFVWDFVFPQAYENLPFRLFCSLLFFGIIFRNRLSSTWRKYIHIYYQVTIT
ICLPFFFFYMLLMNDWSNVWVMSFMSAIFLHILLVHVTRVMFAQTFAGIGLATFFAWVAKGFHLDLTMDWTHVPIFLFIY
VFGNLFYFRNQVEHEAKVSLAKSFGAGIAHEMRNPLSGLCTSIDVIQSVLPSKKEAEKDQYLMSGEDVTLLREVSEDAMN
IIQSGNETIDLLLTSIDENRVSRSSFQKHSAHSVVEKAIESFSYKRATDRFAISLDARSEFDFLGSDTLLKYVMYNLFKN
AFHHRTSEDFHIHVSMTSTEHSNQIVVTDNGAGIAPDVLRNIFQDFYTTGKSGSYGLGLPFCKKVMRSFGGNIECQSQLG
EWSQFPLTFPPITSDIVTEIKNDLTKLKTILTVTNQDILVSKVTDISRFMGFESTILDVNQVLKKKEYEFEFDLIFIDLE
SLDARANQLDRLESLLSFTEARIVYLFEHHPTQRARKAAYEPIWVETQAWLLNTKPTIDRLLYDSSYVSTPTASVALDTS
NKRTIMVVDDNESLRKFTAMLLEKQGFEVIQKEDGQQALDTLEQENVDLILMDIEMPIMDGVEASRRIRSSDKNYASVPI
IAHTGDSSPVTLDKIGSSGMSDFIVKPADKNRLFDKIANWI

Nucleotide


Download         Length: 2046 bp        

>NTDB_id=532849 JOS67_RS22700 WP_203347961.1 1434515..1436560(-) (cqsS) [Vibrio diabolicus strain SLV18]
ATGGACTCGATACGTAAGGTTTATCAATATGCAGAACCTAACCTGACTCTCGTTGGTTGGATGGGGTTTCTTGGCTTTCC
GCTGTACTACTTTGTTTGGGATTTTGTTTTCCCACAGGCTTATGAAAACTTGCCGTTCAGATTGTTTTGTTCACTATTGT
TCTTTGGCATCATTTTTAGAAATCGCCTATCGTCAACGTGGCGAAAATATATCCATATTTACTACCAAGTGACGATAACG
ATTTGCTTACCGTTTTTCTTTTTCTATATGTTACTGATGAATGACTGGTCCAATGTTTGGGTCATGTCCTTTATGTCCGC
GATTTTCTTGCACATTCTATTGGTTCATGTCACGAGAGTTATGTTCGCTCAAACTTTTGCCGGAATAGGTTTAGCGACGT
TCTTTGCTTGGGTGGCGAAAGGGTTTCATCTCGATTTAACAATGGACTGGACGCATGTGCCAATCTTTCTCTTTATTTAT
GTATTTGGCAATTTATTCTATTTTCGGAACCAAGTGGAGCACGAAGCGAAGGTGTCGTTGGCCAAGTCATTCGGGGCCGG
AATTGCGCATGAAATGCGTAACCCTTTAAGTGGCCTTTGCACGTCAATCGATGTTATCCAATCAGTCTTACCCAGTAAAA
AAGAAGCCGAGAAAGACCAATATCTGATGAGCGGAGAGGATGTCACCCTGCTGCGCGAAGTTAGTGAGGATGCGATGAAC
ATCATCCAGTCGGGCAACGAGACGATAGATTTACTTTTGACATCGATAGACGAAAACCGTGTCTCGCGATCCAGTTTCCA
AAAGCATTCTGCTCACTCAGTGGTTGAAAAAGCGATTGAAAGCTTTAGTTATAAGCGTGCGACGGATCGCTTTGCTATAT
CCCTAGATGCGAGAAGTGAGTTTGATTTTCTTGGTAGCGATACCTTACTCAAATACGTTATGTATAACCTTTTCAAGAAC
GCCTTCCATCATCGCACATCTGAAGATTTCCACATACATGTCTCCATGACGAGTACGGAGCACTCAAACCAAATCGTTGT
AACCGATAATGGTGCAGGCATTGCTCCTGATGTCCTACGTAATATATTTCAGGACTTTTACACAACTGGTAAGTCAGGCA
GCTATGGTTTGGGTTTGCCATTTTGTAAAAAAGTGATGCGTTCTTTTGGAGGTAACATTGAATGCCAGTCTCAGCTAGGT
GAGTGGTCTCAGTTCCCGTTAACTTTCCCGCCGATCACATCTGATATCGTGACTGAAATTAAAAACGATTTGACCAAACT
CAAAACCATCCTAACGGTGACTAATCAAGATATTCTTGTGTCGAAAGTGACGGACATTAGCCGTTTTATGGGTTTTGAAT
CAACGATCTTAGATGTTAATCAAGTGCTCAAAAAGAAAGAGTATGAGTTCGAATTCGACCTGATTTTTATCGATCTTGAG
AGCTTGGATGCAAGAGCAAACCAATTAGATAGATTAGAATCTCTTTTGTCTTTCACGGAAGCTCGTATCGTTTATCTTTT
TGAGCATCACCCGACACAGAGAGCACGCAAAGCGGCATATGAGCCTATTTGGGTCGAGACTCAAGCCTGGTTATTGAATA
CTAAGCCAACCATTGACCGTCTCTTGTATGATTCAAGCTATGTGTCGACACCAACGGCCTCAGTGGCTTTGGATACGTCA
AATAAACGGACAATTATGGTCGTGGATGATAACGAATCTTTGCGAAAATTTACCGCGATGTTACTCGAAAAGCAGGGCTT
TGAAGTGATTCAGAAAGAAGACGGGCAGCAAGCACTGGATACATTAGAGCAAGAGAACGTTGACCTCATTCTTATGGATA
TCGAGATGCCCATCATGGATGGTGTAGAAGCTTCAAGGCGAATTCGAAGCTCGGATAAAAACTATGCGTCGGTACCTATT
ATTGCGCATACTGGGGATAGCTCACCTGTTACGCTGGACAAAATAGGCTCTTCTGGCATGTCTGACTTTATCGTAAAACC
AGCGGATAAAAATCGCTTATTCGACAAAATCGCAAACTGGATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(565-677)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(308-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

49.343

100

0.496