Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   JOS67_RS22695 Genome accession   NZ_CP069197
Coordinates   1433231..1434412 (+) Length   393 a.a.
NCBI ID   WP_161444694.1    Uniprot ID   -
Organism   Vibrio diabolicus strain SLV18     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1428231..1439412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOS67_RS22675 (JOS67_22680) - 1428591..1429952 (-) 1362 WP_203347490.1 GGDEF domain-containing protein -
  JOS67_RS22680 (JOS67_22685) - 1429959..1430060 (-) 102 Protein_1281 LuxR C-terminal-related transcriptional regulator -
  JOS67_RS22685 (JOS67_22690) - 1430080..1431267 (-) 1188 WP_203347492.1 EAL domain-containing response regulator -
  JOS67_RS22690 (JOS67_22695) ylqF 1431946..1432890 (+) 945 WP_005395264.1 ribosome biogenesis GTPase YlqF -
  JOS67_RS22695 (JOS67_22700) cqsA 1433231..1434412 (+) 1182 WP_161444694.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  JOS67_RS22700 (JOS67_22705) cqsS 1434515..1436560 (-) 2046 WP_203347961.1 response regulator Regulator
  JOS67_RS22705 (JOS67_22710) - 1436928..1437545 (+) 618 WP_203347493.1 HAD family hydrolase -
  JOS67_RS22710 (JOS67_22715) - 1437632..1438180 (-) 549 WP_005398196.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43679.95 Da        Isoelectric Point: 6.2260

>NTDB_id=532848 JOS67_RS22695 WP_161444694.1 1433231..1434412(+) (cqsA) [Vibrio diabolicus strain SLV18]
MSETIQSKPLPSFIEERLDFHIQDLIEPNENKKHLVLGKRPPCNAVVMQSNDYLALSHNKEIQNAHRDAISQHDDNVVMS
AIFLQDDESKPAFETQLASFVGMPSCLLSQSGWAANVGLLQTICAPNIPVYIDFFAHMSLWEGARIAGAQIHPFMHNNTN
HLRKQISRHGSGIIVVDSVYSTIGTIAPLRDIYEIAQEFDCGLVVDESHSLGTHGTQGAGLLQELDLTHMVDFVTVSLAK
TFAYRAGAILGAEKLAKTLPFVAYPAIFSSTVLPQEIIRLEKTLDVIKKADDKREILFKRAKSLAVGLKRIGFTIRSESQ
IIALECGNERNTERVRDFLEERNVFGAVFCRPATGRNKNIIRFSVNADMTAAEVDHVLSACQEAFVHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=532848 JOS67_RS22695 WP_161444694.1 1433231..1434412(+) (cqsA) [Vibrio diabolicus strain SLV18]
ATGAGTGAAACTATACAAAGCAAACCACTTCCTTCCTTTATTGAGGAACGCCTAGATTTTCATATTCAAGATCTAATTGA
ACCGAACGAGAACAAGAAACACCTTGTTCTTGGTAAACGTCCACCATGTAATGCCGTTGTTATGCAAAGCAATGATTACC
TGGCACTGTCTCATAACAAGGAGATTCAAAACGCGCATCGTGATGCGATTTCTCAACACGATGACAACGTCGTGATGTCC
GCGATTTTCTTGCAAGATGATGAGTCGAAACCTGCATTTGAAACTCAACTAGCCAGTTTTGTCGGCATGCCTAGCTGTCT
GCTTTCTCAATCGGGATGGGCTGCGAATGTCGGTTTATTACAGACTATTTGTGCACCGAACATACCTGTGTATATCGACT
TCTTTGCGCATATGTCTTTATGGGAAGGTGCACGTATCGCAGGAGCACAAATTCATCCGTTCATGCATAACAACACCAAC
CACTTACGAAAACAGATTTCACGCCATGGTTCGGGAATTATTGTTGTGGATTCGGTTTACAGCACTATCGGAACCATTGC
TCCTCTACGTGATATCTACGAAATAGCACAAGAGTTTGACTGCGGCTTAGTTGTGGATGAATCGCACTCGTTAGGTACGC
ACGGTACGCAAGGCGCTGGGCTACTGCAAGAGCTGGATTTGACTCATATGGTGGATTTTGTAACCGTAAGTCTTGCAAAG
ACATTTGCTTATCGTGCTGGCGCAATTTTAGGTGCAGAAAAGCTGGCGAAGACGCTTCCATTTGTCGCGTATCCTGCCAT
TTTCAGCTCCACCGTGTTACCGCAAGAAATTATTCGGTTAGAAAAAACACTGGACGTCATAAAAAAAGCCGATGACAAGC
GGGAGATTTTGTTTAAAAGAGCGAAGTCTCTAGCCGTTGGTTTAAAACGTATTGGGTTTACTATTCGCAGTGAGTCGCAA
ATTATCGCGCTAGAATGTGGCAACGAAAGAAACACTGAGCGAGTTCGCGACTTTCTAGAAGAAAGGAATGTCTTTGGCGC
AGTTTTCTGTCGCCCTGCAACAGGAAGAAACAAGAACATCATTCGTTTTTCTGTCAATGCGGACATGACTGCCGCCGAAG
TCGATCACGTTCTTTCCGCCTGCCAAGAAGCGTTTGTTCATCCCGATCTAGAGTTTGTATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.364

98.473

0.565