Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   LLNCDO700_RS12140 Genome accession   NZ_CP069179
Coordinates   2362015..2363301 (-) Length   428 a.a.
NCBI ID   WP_259687566.1    Uniprot ID   -
Organism   Lactococcus cremoris strain NCDO700     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2357015..2368301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLNCDO700_RS12115 - 2357438..2358031 (-) 594 Protein_2364 PolC-type DNA polymerase III N-terminal domain-containing protein -
  LLNCDO700_RS12120 (LLNCDO700_12080) - 2358205..2358741 (-) 537 WP_011836050.1 hypothetical protein -
  LLNCDO700_RS12125 (LLNCDO700_13965) - 2358748..2359227 (-) 480 WP_228764279.1 hypothetical protein -
  LLNCDO700_RS12130 (LLNCDO700_12085) - 2359148..2360080 (-) 933 WP_259687565.1 FAD/NAD(P)-binding oxidoreductase -
  LLNCDO700_RS12135 (LLNCDO700_12090) - 2360095..2361945 (-) 1851 WP_011836051.1 proline--tRNA ligase -
  LLNCDO700_RS12140 (LLNCDO700_12095) eeP 2362015..2363301 (-) 1287 WP_259687566.1 RIP metalloprotease RseP Regulator
  LLNCDO700_RS12145 (LLNCDO700_12100) - 2363320..2364123 (-) 804 WP_011836053.1 phosphatidate cytidylyltransferase -
  LLNCDO700_RS12150 (LLNCDO700_12105) - 2364123..2364857 (-) 735 WP_011836054.1 isoprenyl transferase -
  LLNCDO700_RS12155 (LLNCDO700_12110) yajC 2365208..2365540 (-) 333 WP_011836055.1 preprotein translocase subunit YajC -
  LLNCDO700_RS12160 (LLNCDO700_12115) - 2365635..2366332 (-) 698 Protein_2373 DNA alkylation repair protein -
  LLNCDO700_RS12165 (LLNCDO700_12120) rlmH 2366350..2366829 (-) 480 WP_011836057.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -

Sequence

Protein


Download         Length: 428 a.a.        Molecular weight: 46412.85 Da        Isoelectric Point: 6.2645

>NTDB_id=532762 LLNCDO700_RS12140 WP_259687566.1 2362015..2363301(-) (eeP) [Lactococcus cremoris strain NCDO700]
MIETLITFIIIFGIIVAIHEYGHLWWAKRSGILVREYAVGMGPKIFAHQAKDGTLYTIRILPLGGYVRLAGWGDDKTEIK
KGQAASLVVSKSEAVNSGDENSVSNIVRRINLSEHVELEEAVPMLITEYDFEKELFIEGEVFGEIKRYSVDHDATIIEED
GTEVRIAPLDVQYQSAGVFHKMLTNFGGPLNNFILGLVAFIVLTFIQGDVPSNSNAIGQVEKGTPAYTAGLKSGDKIQAV
NGTKTADWDKLVTEISSSNGKELKLEISRSGKSETLAVTPKKMDGSYRVGIMQSMKTGFFDKITGGFVQAGQATTAIFRA
LGSLIARPSLDKLGGPVAIYQLSGQAARAGLPTIIQLLAMLSINLGIVNLFPIPVLDGGKIVLNIIEAIRGKALSPEKES
IITLVGVVFMLVLFVAVTWNDILRAFVN

Nucleotide


Download         Length: 1287 bp        

>NTDB_id=532762 LLNCDO700_RS12140 WP_259687566.1 2362015..2363301(-) (eeP) [Lactococcus cremoris strain NCDO700]
TTGATAGAAACTCTGATTACTTTTATTATTATTTTTGGTATTATTGTCGCTATTCATGAATATGGTCACCTTTGGTGGGC
AAAACGTTCTGGAATTCTAGTGCGTGAATATGCCGTAGGAATGGGCCCGAAGATTTTTGCTCATCAAGCAAAAGATGGAA
CGCTCTACACGATTCGGATTTTACCACTTGGGGGCTATGTTCGTTTGGCCGGCTGGGGTGATGATAAAACTGAAATAAAA
AAAGGACAAGCTGCAAGTCTGGTTGTCAGTAAATCTGAAGCAGTAAATTCAGGAGATGAAAATTCTGTCAGTAATATTGT
CAGAAGAATTAATCTGTCAGAACATGTGGAATTAGAAGAAGCTGTTCCAATGTTAATCACTGAATATGATTTTGAAAAAG
AACTTTTCATTGAAGGAGAAGTGTTTGGAGAAATCAAACGTTATTCAGTTGACCATGATGCCACAATTATTGAAGAAGAT
GGCACTGAAGTCCGGATTGCTCCTCTTGATGTTCAATATCAATCAGCAGGGGTCTTCCATAAGATGTTGACGAATTTCGG
TGGTCCTTTGAATAACTTTATTCTAGGACTTGTCGCTTTTATCGTTTTAACTTTTATTCAAGGAGACGTTCCATCAAATT
CTAATGCTATTGGGCAAGTAGAAAAAGGAACACCAGCCTACACCGCAGGTTTAAAATCTGGAGATAAAATTCAAGCTGTC
AATGGAACTAAAACAGCAGATTGGGATAAATTGGTCACAGAAATTTCAAGTTCTAATGGAAAAGAATTAAAACTTGAAAT
TAGCCGCTCAGGCAAATCAGAAACTTTGGCAGTTACCCCTAAAAAGATGGATGGCAGTTATCGTGTTGGAATCATGCAAT
CTATGAAAACAGGCTTCTTTGATAAAATTACAGGTGGTTTTGTTCAAGCAGGACAAGCGACCACAGCAATTTTCAGAGCA
TTAGGAAGTCTGATTGCACGACCGAGTCTTGATAAACTGGGTGGGCCAGTTGCCATCTATCAACTCAGCGGACAAGCGGC
AAGAGCAGGTTTGCCAACAATTATTCAGTTGTTAGCTATGCTCTCAATTAACTTAGGAATTGTCAATCTTTTCCCTATTC
CAGTGCTTGACGGTGGAAAAATCGTCTTAAATATTATTGAAGCAATTCGTGGCAAAGCACTTTCGCCTGAGAAAGAATCA
ATTATCACATTAGTCGGAGTTGTCTTCATGCTTGTGCTCTTTGTGGCTGTAACATGGAATGACATTCTACGGGCTTTTGT
CAACTAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(216-279)

Peptidase family M50 (Peptidase_M50)

(7-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

55.916

100

0.563
  eeP Streptococcus thermophilus LMD-9

55.684

100

0.561