Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   LLNCDO700_RS11805 Genome accession   NZ_CP069179
Coordinates   2308921..2309301 (-) Length   126 a.a.
NCBI ID   WP_289652431.1    Uniprot ID   -
Organism   Lactococcus cremoris strain NCDO700     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2303921..2314301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLNCDO700_RS11770 (LLNCDO700_11725) - 2304846..2305655 (-) 810 WP_011677177.1 metal ABC transporter permease -
  LLNCDO700_RS11775 (LLNCDO700_11730) - 2305648..2306385 (-) 738 WP_011836039.1 metal ABC transporter ATP-binding protein -
  LLNCDO700_RS11780 (LLNCDO700_11735) - 2306564..2307406 (-) 843 WP_259692036.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  LLNCDO700_RS11785 (LLNCDO700_11740) - 2307403..2307840 (-) 438 WP_011836041.1 zinc-dependent MarR family transcriptional regulator -
  LLNCDO700_RS11790 (LLNCDO700_11745) comGG 2307921..2308220 (-) 300 WP_011836042.1 competence type IV pilus minor pilin ComGG Machinery gene
  LLNCDO700_RS11795 (LLNCDO700_11750) comGF 2308244..2308669 (-) 426 WP_014735174.1 competence type IV pilus minor pilin ComGF Machinery gene
  LLNCDO700_RS11800 (LLNCDO700_11755) comGE 2308653..2308949 (-) 297 WP_259692037.1 competence type IV pilus minor pilin ComGE Machinery gene
  LLNCDO700_RS11805 (LLNCDO700_11760) comGD 2308921..2309301 (-) 381 WP_289652431.1 competence type IV pilus minor pilin ComGD Machinery gene
  LLNCDO700_RS11810 (LLNCDO700_11765) comGC 2309312..2309581 (-) 270 WP_259692038.1 competence type IV pilus major pilin ComGC Machinery gene
  LLNCDO700_RS11815 (LLNCDO700_11770) - 2309627..2310883 (-) 1257 WP_262674378.1 Fic family protein -
  LLNCDO700_RS13700 - 2311289..2311357 (-) 69 WP_228764452.1 hypothetical protein -
  LLNCDO700_RS11825 (LLNCDO700_11785) - 2311894..2312460 (-) 567 WP_098383984.1 hypothetical protein -
  LLNCDO700_RS11830 (LLNCDO700_11790) - 2312486..2313496 (-) 1011 WP_098383985.1 DUF6731 family protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 14640.06 Da        Isoelectric Point: 5.2917

>NTDB_id=532757 LLNCDO700_RS11805 WP_289652431.1 2308921..2309301(-) (comGD) [Lactococcus cremoris strain NCDO700]
MLESLLVLLIVSFITLFFSAELTQTVHLFKGELFVLQFENLYKISQENAALQSSSENLESKNGKLIYENKEIDIPKEVEM
AEFLIKFDEKGENSSLQKIKVYLPYEKKTILYQMEMGSGKYKKKIN

Nucleotide


Download         Length: 381 bp        

>NTDB_id=532757 LLNCDO700_RS11805 WP_289652431.1 2308921..2309301(-) (comGD) [Lactococcus cremoris strain NCDO700]
TTGTTAGAATCTCTACTGGTATTACTTATTGTCTCTTTTATCACCCTCTTTTTCTCAGCAGAATTGACTCAAACAGTGCA
TTTATTTAAGGGAGAACTCTTTGTCTTACAGTTCGAAAATTTATACAAAATAAGTCAGGAGAATGCAGCGCTACAAAGTA
GTTCAGAAAATTTAGAAAGTAAAAATGGGAAATTGATTTATGAAAACAAAGAGATAGATATTCCCAAAGAGGTTGAAATG
GCAGAATTTTTGATTAAATTTGATGAGAAAGGGGAGAACTCAAGTTTACAGAAAATCAAAGTTTATTTACCTTATGAGAA
GAAAACAATTTTATATCAAATGGAGATGGGGAGTGGAAAATATAAAAAGAAAATCAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

96.825

100

0.968
  comYD Streptococcus gordonii str. Challis substr. CH1

36.154

100

0.373
  comYD Streptococcus mutans UA140

37.097

98.413

0.365
  comYD Streptococcus mutans UA159

37.097

98.413

0.365