NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	JNO51_RS13845	Genome accession	NZ_CP069163
Coordinates	2908729..2909499 (-)	Length	256 a.a.
NCBI ID	WP_215778310.1	Uniprot ID	-
Organism	Paludibacterium sp. B53371
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2903729..2914499

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JNO51_RS13810	-	2903853..2904269 (+)	417	WP_215778295.1	MaoC family dehydratase	-
JNO51_RS13815	queG	2904271..2905356 (-)	1086	WP_215778297.1	tRNA epoxyqueuosine(34) reductase QueG	-
JNO51_RS13820	tsaE	2905355..2905843 (+)	489	WP_215778299.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	-
JNO51_RS13825	-	2905801..2907051 (+)	1251	WP_215778301.1	N-acetylmuramoyl-L-alanine amidase	-
JNO51_RS13830	-	2907118..2907300 (-)	183	WP_215778304.1	DNA gyrase inhibitor YacG	-
JNO51_RS13835	zapD	2907309..2908067 (-)	759	WP_215778306.1	cell division protein ZapD	-
JNO51_RS13840	coaE	2908112..2908714 (-)	603	WP_215778308.1	dephospho-CoA kinase	-
JNO51_RS13845	pilD	2908729..2909499 (-)	771	WP_215778310.1	A24 family peptidase	Machinery gene
JNO51_RS13850	-	2909499..2910545 (-)	1047	WP_215778313.1	type II secretion system F family protein	-
JNO51_RS13855	-	2910550..2911680 (-)	1131	WP_215778315.1	GspE/PulE family protein	-
JNO51_RS13860	-	2911828..2912997 (-)	1170	WP_215778317.1	porin	-

Sequence

Protein

Download Length: 256 a.a. Molecular weight: 28225.00 Da Isoelectric Point: 9.3272

                                >NTDB_id=532599 JNO51_RS13845 WP_215778310.1 2908729..2909499(-) (pilD) [Paludibacterium sp. B53371]

MMISLLPWWLVGLFGLLIGSFLNVLIHRLPRMVRGEVSGVYNPVWPRSHCPACRHVLRARDLVPVLSWLCLRGRCAFCQA

GISARYPLVELLTGSCFALLAWRAGDAYWLLGGLWLTACLIALLVIDAETGLLPDSLTLPLLWAGLLFNLNGARVPLSQA

VLGAVAGYLVLWLLYWCFRLLTGREGLGYGDFKLLAALGAWLGWQALPPLLLLSSLTGLVAAGILMLLRRMSRRDALPFG

PFLALAGWMYWLWGAA

Nucleotide

Download Length: 771 bp

                                >NTDB_id=532599 JNO51_RS13845 WP_215778310.1 2908729..2909499(-) (pilD) [Paludibacterium sp. B53371]

ATGATGATTTCCTTGCTTCCCTGGTGGCTGGTCGGCCTGTTTGGCCTGCTGATCGGCAGTTTTCTGAATGTACTGATCCA

CCGCCTGCCGCGCATGGTGCGAGGGGAGGTCAGCGGGGTGTACAACCCGGTCTGGCCGCGTTCGCATTGTCCGGCTTGTC

GCCATGTCCTGCGTGCTCGTGACCTGGTTCCGGTGCTCTCCTGGCTGTGCCTGCGCGGACGTTGTGCCTTTTGCCAGGCC

GGCATTTCCGCACGCTACCCCCTGGTCGAGCTGCTGACGGGGAGTTGTTTTGCCTTGCTGGCCTGGCGCGCGGGGGATGC

TTACTGGCTGCTTGGCGGGCTGTGGCTGACGGCCTGCCTGATCGCCCTGCTGGTCATCGATGCCGAAACCGGGCTGTTGC

CGGACAGCCTGACGCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAACCTGAACGGCGCCCGTGTCCCGCTCTCGCAGGCT

GTGCTCGGGGCGGTGGCTGGTTATCTGGTGCTGTGGCTGTTGTACTGGTGCTTCCGGCTGCTGACCGGGCGTGAAGGCCT

GGGGTATGGCGATTTCAAGCTGCTGGCGGCGCTGGGCGCCTGGCTGGGCTGGCAGGCGTTGCCGCCGCTGCTGCTGCTGT

CTTCGCTGACAGGTTTGGTTGCGGCGGGTATCCTTATGCTTTTGCGGCGCATGTCGCGCCGTGATGCATTGCCCTTCGGA

CCATTTCTGGCGCTGGCTGGCTGGATGTACTGGCTGTGGGGGGCTGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(13-103)

Type IV leader peptidase family (Peptidase_A24)

(116-221)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Neisseria gonorrhoeae MS11	51.953	100	0.52
pilD	Vibrio campbellii strain DS40M4	48.699	100	0.512
pilD	Vibrio cholerae strain A1552	50	100	0.512
pilD	Acinetobacter baumannii D1279779	45.769	100	0.465
pilD	Acinetobacter nosocomialis M2	45.769	100	0.465
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	43.75	87.5	0.383

Detailed information NTG0532599