Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   JNO51_RS07415 Genome accession   NZ_CP069163
Coordinates   1559331..1560122 (+) Length   263 a.a.
NCBI ID   WP_215782373.1    Uniprot ID   -
Organism   Paludibacterium sp. B53371     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1554331..1565122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNO51_RS07395 - 1555027..1555671 (-) 645 WP_215782369.1 TetR/AcrR family transcriptional regulator -
  JNO51_RS07400 - 1555772..1557382 (-) 1611 WP_215782370.1 peptide chain release factor 3 -
  JNO51_RS07405 pgeF 1557511..1558257 (-) 747 WP_215782371.1 peptidoglycan editing factor PgeF -
  JNO51_RS07410 rluD 1558244..1559332 (-) 1089 WP_215782372.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JNO51_RS07415 comL 1559331..1560122 (+) 792 WP_215782373.1 outer membrane protein assembly factor BamD Machinery gene
  JNO51_RS07420 - 1560241..1560579 (-) 339 WP_215782374.1 P-II family nitrogen regulator -
  JNO51_RS07425 purL 1560720..1564676 (+) 3957 WP_215782375.1 phosphoribosylformylglycinamidine synthase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30251.12 Da        Isoelectric Point: 7.8530

>NTDB_id=532591 JNO51_RS07415 WP_215782373.1 1559331..1560122(+) (comL) [Paludibacterium sp. B53371]
MKRYVAAMLVVLGLSACATPDTYDETRGWTVDKLYTEARSELDSGNYTRAEKLYETLQARYPYGRYAQQAQIDIAYTYYR
DHEAELALAACDRFIKLHPSHPNVDYVYYLKGLIYLNNDDGWFAKWGGQDMSERDPKASANAFAAFNEVVTRFPNGKYAA
DSLKKMNQLVDALGGYQMHVARYYMKRGAYVAAVNRAQSVVSEYGNTRYVEEALAIMVEGYGRLGMTTLQGDARRVLALN
YPKSQYLSQPWHEQQMAWWKFWN

Nucleotide


Download         Length: 792 bp        

>NTDB_id=532591 JNO51_RS07415 WP_215782373.1 1559331..1560122(+) (comL) [Paludibacterium sp. B53371]
ATGAAAAGATACGTTGCAGCTATGTTGGTTGTGCTGGGATTGTCCGCGTGTGCGACGCCAGATACCTATGACGAAACGCG
TGGCTGGACTGTGGACAAGCTGTATACGGAGGCCCGTTCCGAGCTGGATTCCGGTAATTATACCCGTGCAGAGAAATTAT
ACGAAACTTTGCAGGCGCGTTATCCGTATGGCCGATATGCGCAACAGGCACAAATCGACATTGCATACACTTATTACCGC
GATCATGAGGCGGAATTGGCGCTGGCCGCTTGCGATCGCTTCATCAAGTTGCATCCTTCGCACCCGAATGTCGATTACGT
TTATTACCTCAAGGGCCTGATCTACCTGAATAACGACGATGGCTGGTTCGCCAAGTGGGGCGGTCAGGACATGAGCGAGC
GTGACCCGAAAGCCTCGGCCAATGCCTTTGCTGCTTTCAATGAAGTGGTGACCCGTTTCCCGAATGGCAAATATGCCGCC
GACTCGCTGAAGAAAATGAACCAGCTGGTGGATGCGCTGGGCGGGTATCAAATGCACGTGGCGCGCTACTACATGAAGCG
CGGTGCCTATGTGGCAGCCGTCAACCGGGCTCAGAGCGTCGTCAGCGAATACGGTAATACCCGCTATGTGGAAGAGGCGC
TGGCCATTATGGTCGAGGGCTATGGCCGGCTGGGCATGACCACGCTGCAGGGTGATGCCAGGCGTGTTCTGGCGCTTAAT
TATCCCAAGAGTCAGTATTTGAGCCAGCCATGGCATGAGCAGCAAATGGCCTGGTGGAAGTTCTGGAACTGA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(31-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

55.056

100

0.559
  comL Neisseria gonorrhoeae MS11

53.184

100

0.54