Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   JNO49_RS09920 Genome accession   NZ_CP069162
Coordinates   2164634..2165428 (+) Length   264 a.a.
NCBI ID   WP_028536573.1    Uniprot ID   -
Organism   Paludibacterium yongneupense strain BCRC 80531     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2159634..2170428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNO49_RS09905 - 2159741..2162608 (-) 2868 WP_281424754.1 ribonucleoside-diphosphate reductase subunit alpha -
  JNO49_RS09910 pgeF 2162817..2163554 (-) 738 WP_028536571.1 peptidoglycan editing factor PgeF -
  JNO49_RS09915 rluD 2163541..2164635 (-) 1095 WP_028536572.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JNO49_RS09920 comL 2164634..2165428 (+) 795 WP_028536573.1 outer membrane protein assembly factor BamD Machinery gene
  JNO49_RS09925 - 2165480..2165818 (-) 339 WP_028536574.1 P-II family nitrogen regulator -
  JNO49_RS09930 purL 2165982..2169932 (+) 3951 WP_028536575.1 phosphoribosylformylglycinamidine synthase -
  JNO49_RS09935 - 2169936..2170367 (-) 432 WP_051229468.1 cytidine deaminase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 30570.61 Da        Isoelectric Point: 6.7572

>NTDB_id=532571 JNO49_RS09920 WP_028536573.1 2164634..2165428(+) (comL) [Paludibacterium yongneupense strain BCRC 80531]
MKRYVVAMLVVLGLSACATPDTYDETRGWTVERLYAEAHDELNSGNYTRAVKLYETLEARFPYGRYAQQAQMDIAYTEYR
DNEPELAVAACDRFIKLHPTHPNIDYIYYLKGLVYFNDGNGGALAKWGGQDMSERDPKAQRESFLAFSELVRRFPDSKYY
DDAKAKLLELVTAMGGHEMHVARYYMKRGDYIAAANRAQAVLRDYPNTRYPEEALALMTSAYHELGMIKLSDDSRRVLAL
NYPKSAYLNRPWTVESLPWWKFWN

Nucleotide


Download         Length: 795 bp        

>NTDB_id=532571 JNO49_RS09920 WP_028536573.1 2164634..2165428(+) (comL) [Paludibacterium yongneupense strain BCRC 80531]
ATGAAAAGATACGTGGTTGCAATGCTGGTTGTGCTTGGACTATCCGCCTGCGCCACCCCGGACACCTACGACGAAACGCG
TGGTTGGACCGTGGAGCGGCTGTATGCAGAAGCCCATGATGAGTTGAACAGCGGTAATTATACCCGTGCTGTCAAGCTCT
ACGAAACGCTGGAGGCCCGTTTCCCCTATGGCCGATACGCGCAGCAGGCGCAGATGGACATCGCCTACACCGAATATCGG
GACAATGAGCCGGAATTGGCGGTGGCGGCTTGTGATCGTTTCATCAAGCTGCACCCCACGCATCCGAACATCGACTACAT
CTACTACCTCAAAGGTCTGGTCTACTTCAACGACGGCAACGGCGGCGCGCTGGCGAAGTGGGGCGGCCAGGACATGAGCG
AACGCGACCCGAAGGCGCAGCGCGAATCCTTTCTCGCCTTTAGCGAACTGGTTCGCCGTTTCCCCGACAGCAAATACTAC
GACGATGCCAAGGCCAAACTGCTTGAGCTGGTCACCGCCATGGGCGGGCACGAAATGCACGTGGCGCGTTACTACATGAA
GCGCGGCGATTACATCGCGGCTGCCAATCGCGCCCAGGCCGTCTTGCGCGACTATCCGAATACGCGCTACCCGGAAGAAG
CGCTGGCCTTGATGACGTCGGCCTATCACGAACTGGGCATGATCAAACTGTCGGACGACTCCCGCCGCGTGCTCGCGCTG
AACTATCCGAAGAGTGCCTATCTGAACCGGCCGTGGACTGTGGAAAGCTTGCCGTGGTGGAAGTTCTGGAACTGA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(31-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

56.716

100

0.576
  comL Neisseria gonorrhoeae MS11

55.224

100

0.561