Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   K9U08_RS10335 Genome accession   NZ_CP083503
Coordinates   2091853..2092590 (+) Length   245 a.a.
NCBI ID   WP_000197689.1    Uniprot ID   -
Organism   Escherichia coli strain elppa5     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2086853..2097590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9U08_RS10320 (K9U08_10325) clpC 2087307..2089880 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  K9U08_RS10325 (K9U08_10330) yfiH 2090010..2090741 (-) 732 WP_001520329.1 purine nucleoside phosphorylase YfiH -
  K9U08_RS10330 (K9U08_10335) rluD 2090738..2091718 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  K9U08_RS10335 (K9U08_10340) comL 2091853..2092590 (+) 738 WP_000197689.1 outer membrane protein assembly factor BamD Machinery gene
  K9U08_RS10340 (K9U08_10345) - 2092641..2093987 (-) 1347 WP_164473244.1 IS4-like element IS4 family transposase -
  K9U08_RS10345 (K9U08_10350) raiA 2094301..2094642 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  K9U08_RS10350 (K9U08_10355) pheL 2094746..2094793 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  K9U08_RS10355 (K9U08_10360) pheA 2094892..2096052 (+) 1161 WP_020233815.1 bifunctional chorismate mutase/prephenate dehydratase -
  K9U08_RS10360 (K9U08_10365) tyrA 2096095..2097216 (-) 1122 WP_000225220.1 bifunctional chorismate mutase/prephenate dehydrogenase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27828.45 Da        Isoelectric Point: 7.9331

>NTDB_id=532565 K9U08_RS10335 WP_000197689.1 2091853..2092590(+) (comL) [Escherichia coli strain elppa5]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAKYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=532565 K9U08_RS10335 WP_000197689.1 2091853..2092590(+) (comL) [Escherichia coli strain elppa5]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCATATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCTCGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCAAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTAATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376