Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   JNO50_RS11235 Genome accession   NZ_CP069161
Coordinates   2478425..2479216 (-) Length   263 a.a.
NCBI ID   WP_189534751.1    Uniprot ID   A0A918P4Z3
Organism   Paludibacterium paludis strain BCRC 80514     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2473425..2484216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNO50_RS11225 purL 2473925..2477878 (-) 3954 WP_189534754.1 phosphoribosylformylglycinamidine synthase -
  JNO50_RS11230 - 2478017..2478355 (+) 339 WP_189534752.1 P-II family nitrogen regulator -
  JNO50_RS11235 comL 2478425..2479216 (-) 792 WP_189534751.1 outer membrane protein assembly factor BamD Machinery gene
  JNO50_RS11240 rluD 2479215..2480300 (+) 1086 WP_189534749.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JNO50_RS11245 pgeF 2480287..2481030 (+) 744 WP_189534747.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30239.27 Da        Isoelectric Point: 8.3182

>NTDB_id=532553 JNO50_RS11235 WP_189534751.1 2478425..2479216(-) (comL) [Paludibacterium paludis strain BCRC 80514]
MKRYVAALLVVSGLTACATTETYDETRGWSVEKLYAEAHDELNSGNYNRAVKLYETLEARYPYGRFAQQAQMDIAYAQYK
DNEAALSITACDRFIKLHPTHPNLDYIYYLKGLVYFNDDSGLLGKWAGQDMSERDPKAQREAFLAFRELTVRYPDSRYAP
DALDKMNKLVDALGGHEMHVARYYMKRGAYVAAVNRAQGVVKDYANTRYVEEALALSVEAYRRLGLTKLSDDNRRVLAAT
FPKSAYLQGKWAVEELPWWKFWK

Nucleotide


Download         Length: 792 bp        

>NTDB_id=532553 JNO50_RS11235 WP_189534751.1 2478425..2479216(-) (comL) [Paludibacterium paludis strain BCRC 80514]
ATGAAGAGATACGTTGCAGCACTGTTGGTTGTGTCGGGCCTCACCGCTTGCGCCACTACCGAAACCTACGATGAGACGCG
CGGCTGGAGCGTGGAAAAACTGTACGCCGAAGCCCATGATGAACTGAATAGCGGTAATTATAACCGGGCTGTCAAGTTAT
ACGAAACGCTGGAAGCGCGCTATCCGTACGGACGCTTCGCCCAGCAGGCCCAGATGGATATCGCCTATGCCCAATACAAG
GACAACGAGGCGGCCCTGTCCATTACCGCGTGCGACCGTTTCATCAAGCTGCACCCGACCCATCCGAATCTGGACTATAT
CTACTATCTGAAGGGTCTCGTCTATTTCAATGACGACTCGGGTCTGCTCGGCAAGTGGGCCGGGCAGGACATGAGCGAAC
GCGATCCCAAGGCCCAGCGAGAAGCCTTCCTCGCTTTCCGCGAGCTGACCGTGCGCTATCCTGACAGCCGTTACGCGCCG
GACGCGCTGGACAAGATGAACAAGCTCGTGGACGCGCTCGGCGGACACGAAATGCATGTGGCCCGCTACTACATGAAGCG
CGGCGCCTATGTGGCGGCGGTCAACCGCGCCCAGGGCGTGGTGAAGGATTACGCCAACACGCGCTATGTGGAAGAAGCGC
TGGCGCTGTCCGTCGAGGCCTACCGGCGCCTCGGTCTGACCAAACTGTCCGACGACAACCGCCGCGTGCTGGCGGCGACT
TTCCCCAAGAGCGCCTACCTGCAGGGCAAATGGGCGGTGGAAGAGCTGCCCTGGTGGAAGTTCTGGAAGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(32-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

57.519

100

0.582
  comL Neisseria gonorrhoeae MS11

56.391

100

0.57