Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JN168_RS04130 Genome accession   NZ_CP069082
Coordinates   918875..919294 (+) Length   139 a.a.
NCBI ID   WP_107512523.1    Uniprot ID   -
Organism   Staphylococcus gallinarum strain STP534     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 913875..924294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JN168_RS04100 atpD 914014..915426 (+) 1413 WP_042739536.1 F0F1 ATP synthase subunit beta -
  JN168_RS04105 - 915446..915853 (+) 408 WP_042739535.1 F0F1 ATP synthase subunit epsilon -
  JN168_RS04110 - 916071..916304 (+) 234 WP_042739534.1 DUF1146 family protein -
  JN168_RS04115 murA 916416..917681 (+) 1266 WP_042739533.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  JN168_RS04120 fabZ 917733..918173 (+) 441 WP_279526192.1 3-hydroxyacyl-ACP dehydratase FabZ -
  JN168_RS04125 - 918235..918684 (-) 450 WP_042739531.1 YwpF-like family protein -
  JN168_RS04130 ssb 918875..919294 (+) 420 WP_107512523.1 single-stranded DNA-binding protein Machinery gene
  JN168_RS04135 - 919749..920432 (+) 684 WP_229366892.1 transglycosylase family protein -
  JN168_RS04140 tenA 920739..921428 (+) 690 WP_279526193.1 thiaminase II -
  JN168_RS04145 thiD 921421..922242 (+) 822 WP_042739527.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  JN168_RS04150 thiM 922235..923023 (+) 789 WP_279526194.1 hydroxyethylthiazole kinase -
  JN168_RS04155 thiE 923026..923664 (+) 639 WP_279526195.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 15862.07 Da        Isoelectric Point: 7.2119

>NTDB_id=532232 JN168_RS04130 WP_107512523.1 918875..919294(+) (ssb) [Staphylococcus gallinarum strain STP534]
MINNIVIVGRLTKDPQIYEKEGKKLATFCVAVNRSYKDKDQNTICDYLYCKAFGKLAHNIEHYINQGSLVGVTGQLQSSK
YEKEGQTHFVSEIFVESIKFMSKRATKESTSLYETIPLDAQQQLTEQSEIANNKLFEIV

Nucleotide


Download         Length: 420 bp        

>NTDB_id=532232 JN168_RS04130 WP_107512523.1 918875..919294(+) (ssb) [Staphylococcus gallinarum strain STP534]
ATGATTAATAACATTGTCATTGTCGGTAGACTGACAAAGGACCCACAAATATATGAGAAGGAGGGAAAGAAATTAGCTAC
GTTCTGTGTAGCTGTTAATCGGAGTTACAAAGACAAAGACCAGAATACCATTTGTGATTATTTATATTGTAAAGCATTCG
GTAAACTAGCTCATAATATTGAACACTATATCAACCAAGGTTCACTAGTCGGCGTTACTGGCCAGTTACAATCTAGTAAA
TATGAGAAAGAAGGTCAGACACATTTTGTATCTGAAATATTTGTCGAATCAATTAAGTTCATGTCTAAACGTGCTACGAA
AGAAAGTACATCACTTTATGAAACTATCCCACTAGATGCGCAACAACAATTAACCGAACAATCTGAAATAGCAAACAATA
AATTATTTGAAATTGTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

56.522

99.281

0.561
  ssb Staphylococcus aureus MW2

55.797

99.281

0.554