Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   JOA01_RS05995 Genome accession   NZ_CP069079
Coordinates   1180867..1182669 (-) Length   600 a.a.
NCBI ID   WP_217373926.1    Uniprot ID   -
Organism   Streptococcus parasuis strain BS26     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1175867..1187669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOA01_RS05970 (JOA01_05975) - 1177229..1177717 (-) 489 WP_217373921.1 LURP-one-related/scramblase family protein -
  JOA01_RS05975 (JOA01_05980) prsA 1177985..1179001 (-) 1017 WP_217373922.1 peptidylprolyl isomerase PrsA -
  JOA01_RS05980 (JOA01_05985) - 1179064..1179783 (-) 720 WP_217373923.1 O-methyltransferase -
  JOA01_RS05985 (JOA01_05990) - 1179858..1180406 (-) 549 WP_217373924.1 DUF6630 family protein -
  JOA01_RS05990 (JOA01_05995) - 1180419..1180865 (-) 447 WP_217373925.1 hypothetical protein -
  JOA01_RS05995 (JOA01_06000) pepF 1180867..1182669 (-) 1803 WP_217373926.1 oligoendopeptidase F Regulator
  JOA01_RS06000 (JOA01_06005) coiA 1182742..1183680 (-) 939 WP_217373927.1 competence protein CoiA Machinery gene
  JOA01_RS06005 (JOA01_06010) metG 1183745..1185748 (-) 2004 WP_217373928.1 methionine--tRNA ligase -
  JOA01_RS06010 (JOA01_06015) - 1185914..1186507 (+) 594 WP_217373929.1 DUF1361 domain-containing protein -
  JOA01_RS06015 (JOA01_06020) - 1186551..1186895 (-) 345 WP_217373930.1 hypothetical protein -
  JOA01_RS06020 (JOA01_06025) - 1187560..1187661 (-) 102 WP_217373931.1 putative holin-like toxin -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69210.38 Da        Isoelectric Point: 4.5292

>NTDB_id=532176 JOA01_RS05995 WP_217373926.1 1180867..1182669(-) (pepF) [Streptococcus parasuis strain BS26]
MSKQRHEIEEKYQWDLTTIFPTDEAWEAELASLQAETETAKDFAGHLLDSAKSLLDISETQLGLMRRIEKLYVYASMKND
QDTREGKYQEFQAKAMGLYSAFSQAFAFYEPEFMAITEEQLKAFMDEEPTLVQYSHQFEKLLAAKDHVLSQEIEEVLAAT
SEIFESPAETFSVLDNASILFPEIADEEGHLVPLSHGNYIHFMESKNRDVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHASLAANFIPESVYDTLVEAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDFSTKISYEDALK
KCQETLEIFGEDYSAIVKEAYENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRKT
QPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGQTNEKYYGLSAEENPEIQFEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYPL
NVIAKAGVDMTKEDYLNDAFKVFEARLTELEELVEKGLHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=532176 JOA01_RS05995 WP_217373926.1 1180867..1182669(-) (pepF) [Streptococcus parasuis strain BS26]
ATGTCTAAACAACGTCATGAAATTGAAGAAAAATACCAGTGGGATTTGACCACTATTTTTCCAACCGATGAAGCTTGGGA
AGCAGAATTAGCTTCATTACAAGCAGAAACTGAAACGGCAAAGGATTTTGCTGGCCACTTGCTTGATTCGGCTAAAAGTC
TCTTAGATATTAGTGAGACACAACTCGGTCTCATGCGTCGCATTGAAAAACTCTATGTCTATGCGTCTATGAAGAACGAT
CAAGATACTCGTGAAGGTAAATACCAGGAATTTCAGGCTAAAGCCATGGGCTTGTATTCGGCCTTTTCACAGGCTTTTGC
ATTCTATGAACCTGAATTTATGGCTATTACTGAGGAACAGTTGAAAGCATTCATGGATGAAGAGCCAACTTTGGTGCAGT
ACAGCCATCAATTTGAAAAACTCTTAGCAGCTAAGGACCATGTTTTGTCACAAGAAATTGAAGAAGTATTGGCTGCTACG
AGTGAGATTTTCGAATCTCCAGCTGAAACTTTCTCTGTTTTGGATAATGCAAGTATCCTATTCCCTGAAATTGCGGATGA
AGAGGGACATTTGGTACCACTTTCTCACGGTAACTACATCCACTTTATGGAGTCTAAAAACCGCGACGTCCGTCAAGAAG
CATATGAGGCTATGTACGGAACCTATGAGCAGTTTCAGCATACCTACGCTAAGACTCTGCAGTCAAACGTTAAGGTCAAT
AACCTGAAAGCACGTTTGCGGAAGTACGACTCAGCCCGTCACGCATCTCTTGCAGCCAATTTTATTCCAGAATCTGTCTA
CGATACATTAGTTGAGGCAGTCAACAAGCACCTCCCGCTCTTGCACCGTTATATCAATTTGCGAAAGAAACTCTTGGGTA
TTGACGACTTGAAGATGTACGATATGTACACGCCATTGTCAGATTTTAGCACCAAGATTTCCTATGAAGATGCACTCAAA
AAATGCCAAGAAACCTTGGAAATCTTCGGTGAGGATTATTCGGCTATTGTAAAAGAAGCCTATGAGAATCGTTGGATTGA
CGTCCATGTCAATGAAGGAAAACGCTCAGGAGCATATTCAGGTGGTGCCTACGACACAAACGCCTTCATGCTTCTCAACT
GGCAAGATAACTTGGATAACATGTACACCCTTATCCATGAAACAGGACATTCTCTTCATTCCATGTTGACTCGCAAGACA
CAACCCTATGTCTATGGCCATTATTCACTTTTCTTAGCTGAAATTGCTTCAACTACCAACGAAAACCTTCTGACTGAAAA
ACTATTGGCAGAAGTAGAAGATGACAAGGAACGCTTTGCTATTCTTAACCATTACCTAGATGGTTTCCGTGGTACAGTCT
TCCGCCAGACACAATTTGCCGAGTTTGAACAGGCTATCTATAAGGCAGACCAAGAAGGTCAAGTCTTGACGGCTGATTTC
CTCAATGAATTATACGGTCAGACTAACGAAAAATACTACGGACTTTCTGCAGAAGAAAACCCAGAAATCCAGTTTGAGTG
GGCTCGCATTCCACACTTCTATTACAATTTCTATGTCTATCAATATGCGACAGGTTTTGCGGCAGCATCAGCTCTCGCAA
ACAAGATTGTCAATGGTAGTCCAGAAGACAAAGAAAACTATCTCAACTACTTGAAGGCTGGTAGCTCAGATTATCCCCTC
AACGTCATTGCAAAAGCTGGTGTAGATATGACCAAGGAAGACTATCTTAACGATGCTTTCAAAGTTTTTGAAGCACGCCT
AACTGAATTGGAAGAGCTTGTTGAAAAAGGGTTACATCTCTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

70

100

0.7