Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   JOA01_RS05145 Genome accession   NZ_CP069079
Coordinates   1004893..1006119 (-) Length   408 a.a.
NCBI ID   WP_130555333.1    Uniprot ID   A0A4Q8L0K7
Organism   Streptococcus parasuis strain BS26     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 999893..1011119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOA01_RS05120 (JOA01_05125) - 1000182..1001153 (-) 972 WP_254451574.1 excalibur calcium-binding domain-containing protein -
  JOA01_RS09960 - 1001283..1001516 (-) 234 WP_254451575.1 hypothetical protein -
  JOA01_RS05125 (JOA01_05130) - 1001648..1001830 (+) 183 WP_002934978.1 4-oxalocrotonate tautomerase -
  JOA01_RS05130 (JOA01_05135) lepA 1001880..1003712 (-) 1833 WP_217373802.1 translation elongation factor 4 -
  JOA01_RS05135 (JOA01_05140) ndk 1003810..1004223 (-) 414 WP_172036157.1 nucleoside-diphosphate kinase -
  JOA01_RS05140 (JOA01_05145) yihA 1004245..1004832 (-) 588 WP_130555334.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  JOA01_RS05145 (JOA01_05150) clpX 1004893..1006119 (-) 1227 WP_130555333.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  JOA01_RS05150 (JOA01_05155) - 1006317..1006829 (-) 513 WP_217373803.1 dihydrofolate reductase -
  JOA01_RS05155 (JOA01_05160) - 1007040..1007879 (-) 840 WP_217373804.1 thymidylate synthase -
  JOA01_RS05160 (JOA01_05165) - 1007931..1008254 (-) 324 WP_217373805.1 hypothetical protein -
  JOA01_RS05165 (JOA01_05170) - 1008392..1009351 (-) 960 WP_217373806.1 ROK family glucokinase -
  JOA01_RS05170 (JOA01_05175) - 1009512..1009847 (-) 336 WP_171989804.1 hypothetical protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45477.05 Da        Isoelectric Point: 4.5673

>NTDB_id=532172 JOA01_RS05145 WP_130555333.1 1004893..1006119(-) (clpX) [Streptococcus parasuis strain BS26]
MAIKHTQELIYCSFCGKNQEEVKKIIAGNNVFICNECVELAQEIIREELAEEVLTDLADTPKPQELLNILNNYVIGQDRA
KRALAVAVYNHYKRINFQDSRDENDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENIL
LKLLQAADFNIDRAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQVDTKN
ILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNRAIDEKESYMQHIIADDIQKFGIIPELIGRLPVLAALDQLTTEDLIRIL
TEPKNALVKQYQTLLSYDNVELEFDQDALEEIAKKAIERKTGARGLRSIIEETMMDVMFEVPSQENVKRVRVTKDAVDGK
EKPLLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=532172 JOA01_RS05145 WP_130555333.1 1004893..1006119(-) (clpX) [Streptococcus parasuis strain BS26]
ATGGCTATCAAGCATACACAAGAGCTTATCTATTGCTCATTTTGTGGTAAAAACCAAGAAGAAGTTAAAAAAATTATTGC
AGGAAATAATGTTTTCATTTGTAATGAGTGTGTTGAGTTAGCTCAAGAAATCATTCGTGAAGAATTGGCTGAAGAAGTAC
TGACAGATTTGGCAGACACACCAAAGCCACAAGAATTACTCAATATTTTAAACAATTATGTCATTGGACAAGATCGTGCT
AAACGTGCATTGGCAGTGGCTGTTTATAATCACTACAAACGTATTAATTTCCAAGACAGTCGCGATGAAAATGATGTTGA
TTTGCAAAAATCTAATATCTTGATGATTGGCCCGACCGGTTCAGGAAAAACCTTCCTAGCTCAGACCTTGGCTAAAAGTT
TGAATGTCCCGTTTGCTATTGCTGATGCGACCGCTCTTACTGAGGCTGGTTATGTGGGTGAAGATGTTGAAAATATTTTA
CTTAAATTATTGCAGGCAGCAGATTTTAACATTGACCGTGCTGAAAGAGGTATCATCTATGTGGATGAAATTGATAAAAT
TGCCAAAAAAGGTGAAAATGTGTCCATTACCCGTGACGTCTCGGGTGAAGGTGTCCAACAAGCTCTCTTAAAAATTATTG
AAGGAACCGTTGCTAGTGTACCTCCACAAGGTGGACGAAAACACCCTAATCAAGAAATGATTCAAGTCGATACGAAAAAC
ATTCTTTTCATCGTTGGCGGTGCGTTTGATGGTATCGAGGAAATTGTTAAGCAACGATTAGGAGAGAAAATCATTGGTTT
TGGTCAAAACAATCGTGCTATTGATGAAAAAGAATCATACATGCAACATATCATTGCTGATGATATTCAAAAATTTGGTA
TTATTCCTGAGTTGATTGGACGATTACCTGTTTTGGCAGCCTTAGATCAATTAACGACAGAGGATTTGATTCGTATTTTG
ACTGAGCCGAAGAATGCTTTGGTAAAACAGTACCAAACTCTTTTATCCTACGATAATGTGGAGTTAGAATTTGACCAGGA
TGCCTTGGAGGAAATTGCCAAAAAGGCTATTGAACGGAAAACAGGTGCACGGGGACTTCGTTCGATTATTGAAGAAACCA
TGATGGATGTGATGTTTGAAGTTCCTAGTCAAGAGAATGTAAAACGTGTTCGTGTTACAAAAGATGCAGTAGATGGTAAG
GAAAAACCTTTGCTAGAAACTGCTTAA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q8L0K7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

84.108

100

0.843
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.711

98.529

0.569