Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   LAJ62_RS13370 Genome accession   NZ_CP083410
Coordinates   2736009..2736746 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain RP437     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2731009..2741746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAJ62_RS13355 (LAJ62_13320) clpC 2731463..2734036 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  LAJ62_RS13360 (LAJ62_13325) yfiH 2734166..2734897 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  LAJ62_RS13365 (LAJ62_13330) rluD 2734894..2735874 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LAJ62_RS13370 (LAJ62_13335) comL 2736009..2736746 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  LAJ62_RS13375 (LAJ62_13340) raiA 2737017..2737358 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  LAJ62_RS13380 (LAJ62_13345) pheL 2737462..2737509 (+) 48 WP_010723158.1 phe operon leader peptide -
  LAJ62_RS13385 (LAJ62_13350) pheA 2737608..2738768 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  LAJ62_RS13390 (LAJ62_13355) tyrA 2738811..2739932 (-) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  LAJ62_RS13395 (LAJ62_13360) aroF 2739943..2741013 (-) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  LAJ62_RS13400 (LAJ62_13365) yfiL 2741223..2741588 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=532162 LAJ62_RS13370 WP_000197686.1 2736009..2736746(+) (comL) [Escherichia coli strain RP437]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=532162 LAJ62_RS13370 WP_000197686.1 2736009..2736746(+) (comL) [Escherichia coli strain RP437]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376