Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   JOA01_RS01540 Genome accession   NZ_CP069079
Coordinates   303092..304384 (+) Length   430 a.a.
NCBI ID   WP_217374636.1    Uniprot ID   -
Organism   Streptococcus parasuis strain BS26     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 298092..309384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOA01_RS01515 (JOA01_01515) - 298745..299386 (+) 642 WP_217374632.1 response regulator transcription factor -
  JOA01_RS01520 (JOA01_01520) - 299438..300838 (+) 1401 WP_171989465.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  JOA01_RS01525 (JOA01_01525) - 300840..301217 (+) 378 WP_217374633.1 S1 RNA-binding domain-containing protein -
  JOA01_RS01530 (JOA01_01530) cysK 301371..302297 (-) 927 WP_217374634.1 cysteine synthase A -
  JOA01_RS01535 (JOA01_01535) - 302403..303035 (-) 633 WP_217374635.1 YigZ family protein -
  JOA01_RS01540 (JOA01_01540) comFA/cflA 303092..304384 (+) 1293 WP_217374636.1 DEAD/DEAH box helicase Machinery gene
  JOA01_RS01545 (JOA01_01545) - 304377..305042 (+) 666 WP_217374637.1 ComF family protein -
  JOA01_RS01550 (JOA01_01550) raiA 305119..305658 (+) 540 WP_217374638.1 ribosome-associated translation inhibitor RaiA -

Sequence

Protein


Download         Length: 430 a.a.        Molecular weight: 48662.30 Da        Isoelectric Point: 9.1306

>NTDB_id=532158 JOA01_RS01540 WP_217374636.1 303092..304384(+) (comFA/cflA) [Streptococcus parasuis strain BS26]
MNELENYHGRLFTKYQLTSEERKKAKTISSVVGKNSCFRCGTSFEEENKLPNAAYYCRACLLLGRVRTDEKLYYFPQKDF
SMNACLLWKGALTDWQQRISDGLVANVEKRQATLVHAVTGAGKTEMMYHAVASLINKGGAVCLASPRIDVCIELYKRLQN
DFSVPISLLHEKSDPYFRTPLVVATTHQLLKFYQAFDLVLIDEVDAFPYADNPILYRAADNAVKVDGVLVFLTATSTDEL
DKKVKSGKLQKLSLPRRFHGNPLVVPQKVWFSKFDTYLKKNKLVPKLRNAIQKQRETGYPLLIFVPEISKGLKFATIMEQ
IFPEETIGFVSSQTDNRLEIVEGFRNKEITILISTTILERGVTFPGVDVIVVQADHYLYTLSSLVQISGRVGRSMDRPTG
LLLFFHEGSTQSIEKAIAEIKQMNKEAGYV

Nucleotide


Download         Length: 1293 bp        

>NTDB_id=532158 JOA01_RS01540 WP_217374636.1 303092..304384(+) (comFA/cflA) [Streptococcus parasuis strain BS26]
ATGAATGAACTAGAGAATTACCATGGAAGACTTTTTACTAAATACCAATTAACGTCAGAAGAAAGAAAAAAAGCAAAAAC
AATTTCCAGTGTAGTAGGAAAGAATTCTTGTTTCCGATGCGGTACATCGTTTGAGGAAGAAAACAAGCTGCCAAATGCTG
CGTATTATTGTCGGGCTTGTCTCCTTTTGGGGAGAGTTCGAACAGATGAGAAACTCTACTATTTTCCACAGAAAGATTTT
TCAATGAATGCTTGTCTTCTATGGAAGGGGGCGCTGACCGATTGGCAACAACGAATATCAGATGGACTAGTTGCGAATGT
GGAAAAACGACAAGCAACTCTTGTTCATGCTGTAACAGGTGCGGGCAAAACGGAAATGATGTACCATGCTGTTGCATCAC
TAATTAATAAAGGAGGTGCTGTATGTCTAGCCAGTCCAAGAATTGATGTTTGTATTGAACTCTACAAGCGACTACAAAAT
GATTTTTCGGTCCCAATTAGTCTGCTACATGAGAAATCAGACCCATATTTCAGAACGCCACTCGTTGTTGCGACCACTCA
TCAGTTGTTAAAGTTCTACCAGGCATTTGATTTGGTCTTGATCGATGAAGTAGATGCTTTCCCCTATGCAGACAACCCAA
TATTATATCGAGCAGCAGATAATGCAGTTAAAGTAGACGGTGTTTTAGTATTTTTAACAGCAACCTCTACGGATGAATTA
GATAAAAAAGTCAAATCAGGTAAATTGCAAAAACTCAGTCTCCCTAGGCGTTTTCATGGAAACCCGCTTGTGGTTCCGCA
AAAGGTCTGGTTTTCCAAATTCGATACATATTTGAAGAAAAATAAATTAGTTCCAAAACTCAGAAACGCCATTCAAAAGC
AAAGAGAAACAGGCTATCCATTACTTATTTTTGTACCAGAAATTTCGAAAGGATTGAAATTTGCAACCATAATGGAACAA
ATCTTTCCAGAAGAAACAATTGGTTTTGTATCGAGTCAGACAGACAATCGGCTTGAAATAGTGGAAGGATTTCGCAACAA
AGAAATTACAATTTTAATTTCTACTACAATCTTAGAGCGTGGTGTAACATTCCCAGGAGTAGATGTCATTGTTGTTCAAG
CCGATCACTACTTATACACGTTATCGAGTCTCGTGCAAATTTCAGGTCGGGTCGGAAGAAGTATGGACCGTCCGACGGGC
TTACTTCTGTTTTTTCATGAAGGAAGTACGCAGTCAATTGAAAAGGCAATTGCAGAAATCAAACAAATGAATAAGGAGGC
GGGTTATGTCTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(288-393)

Type III restriction enzyme, res subunit (ResIII)

(92-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus pneumoniae Rx1

64.554

99.07

0.64
  comFA/cflA Streptococcus pneumoniae D39

64.554

99.07

0.64
  comFA/cflA Streptococcus pneumoniae R6

64.554

99.07

0.64
  comFA/cflA Streptococcus mitis NCTC 12261

64.554

99.07

0.64
  comFA/cflA Streptococcus pneumoniae TIGR4

64.554

99.07

0.64
  comFA/cflA Streptococcus mitis SK321

64.319

99.07

0.637
  comFA Lactococcus lactis subsp. cremoris KW2

50.98

94.884

0.484
  comFA Latilactobacillus sakei subsp. sakei 23K

36.659

100

0.367