Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   JNE45_RS14745 Genome accession   NZ_CP069061
Coordinates   2889179..2889820 (-) Length   213 a.a.
NCBI ID   WP_144472265.1    Uniprot ID   -
Organism   Bacillus safensis strain F6     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2884179..2894820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE45_RS14710 (JNE45_14710) - 2885289..2885720 (+) 432 WP_024423315.1 Na(+)/H(+) antiporter subunit B -
  JNE45_RS14715 (JNE45_14715) - 2885720..2886061 (+) 342 WP_048237322.1 Na(+)/H(+) antiporter subunit C -
  JNE45_RS14720 (JNE45_14720) - 2886054..2887532 (+) 1479 WP_197197729.1 Na+/H+ antiporter subunit D -
  JNE45_RS14725 (JNE45_14725) - 2887539..2888018 (+) 480 WP_203128789.1 Na+/H+ antiporter subunit E -
  JNE45_RS14730 (JNE45_14730) - 2888018..2888299 (+) 282 WP_039181117.1 Na(+)/H(+) antiporter subunit F1 -
  JNE45_RS14735 (JNE45_14735) mnhG 2888283..2888657 (+) 375 WP_144472360.1 monovalent cation/H(+) antiporter subunit G -
  JNE45_RS14740 (JNE45_14740) - 2888766..2889155 (-) 390 WP_203128790.1 hotdog fold thioesterase -
  JNE45_RS14745 (JNE45_14745) comA 2889179..2889820 (-) 642 WP_144472265.1 response regulator transcription factor Regulator
  JNE45_RS14750 (JNE45_14750) comP 2889901..2892207 (-) 2307 WP_203128791.1 ATP-binding protein Regulator
  JNE45_RS14755 (JNE45_14755) comX 2892221..2892391 (-) 171 WP_012011107.1 competence pheromone ComX -
  JNE45_RS14760 (JNE45_14760) - 2892369..2893292 (-) 924 WP_203128792.1 polyprenyl synthetase family protein -
  JNE45_RS14765 (JNE45_14765) degQ 2893444..2893584 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  JNE45_RS14770 (JNE45_14770) - 2894090..2894446 (+) 357 WP_144472257.1 inner spore coat protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24153.53 Da        Isoelectric Point: 4.5634

>NTDB_id=532064 JNE45_RS14745 WP_144472265.1 2889179..2889820(-) (comA) [Bacillus safensis strain F6]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILENNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHDLLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=532064 JNE45_RS14745 WP_144472265.1 2889179..2889820(-) (comA) [Bacillus safensis strain F6]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATTTTAGAATCAGACCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGACGTGATTTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAGCAAATCTTAGAAAACAACCAGCAAGTAAAAATTATC
ATTTATACAGGGTATGAAGTAGATGATTATTTTGAAGAGGCTATTCGGGCTGGATTACACGGTGCAATTAGTAAAACAGA
GACGAAAGACAAAATTATTGAATACATACACCGCACATTACAAGGAGAAGTTGTCATTCAGCTGTCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGCAGACTGATCACGACCTCTTAACCGAACGGGAGTGTTTGATC
CTTAGAGAAGTAGAAAAAGGATACACGAACCAGGAGATTGCCGATGTGCTTCATTTGAGCAAACGGTCAATTGAGTACAG
TTTGACATCCATCTTTAATAAGCTGAATGTTGGATCTCGTACAGAAGCGGTGTTAATTGCCAAGTCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.963

100

0.723