Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   JNE45_RS11440 Genome accession   NZ_CP069061
Coordinates   2254505..2254798 (-) Length   97 a.a.
NCBI ID   WP_048239211.1    Uniprot ID   -
Organism   Bacillus safensis strain F6     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2249505..2259798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE45_RS11395 (JNE45_11395) sinR 2249673..2250008 (+) 336 WP_024422969.1 transcriptional regulator SinR Regulator
  JNE45_RS11400 (JNE45_11400) tasA 2250076..2250876 (-) 801 WP_111292280.1 biofilm matrix protein TasA -
  JNE45_RS11405 (JNE45_11405) sipW 2250931..2251503 (-) 573 WP_203128609.1 signal peptidase I SipW -
  JNE45_RS11410 (JNE45_11410) tapA 2251556..2252083 (-) 528 WP_203128610.1 amyloid fiber anchoring/assembly protein TapA -
  JNE45_RS11415 (JNE45_11415) - 2252383..2252661 (+) 279 WP_223251017.1 DUF3889 domain-containing protein -
  JNE45_RS11420 (JNE45_11420) - 2252695..2252889 (-) 195 WP_203128611.1 YqzE family protein -
  JNE45_RS11425 (JNE45_11425) - 2252949..2253332 (-) 384 WP_203128612.1 competence type IV pilus minor pilin ComGG -
  JNE45_RS11430 (JNE45_11430) comGF 2253329..2253856 (-) 528 WP_186318660.1 competence type IV pilus minor pilin ComGF -
  JNE45_RS19405 comGE 2253768..2254082 (-) 315 WP_111292285.1 competence type IV pilus minor pilin ComGE -
  JNE45_RS11435 (JNE45_11435) comGD 2254066..2254512 (-) 447 WP_197198255.1 competence type IV pilus minor pilin ComGD -
  JNE45_RS11440 (JNE45_11440) comGC 2254505..2254798 (-) 294 WP_048239211.1 competence type IV pilus major pilin ComGC Machinery gene
  JNE45_RS11445 (JNE45_11445) comGB 2254815..2255855 (-) 1041 WP_203128613.1 competence type IV pilus assembly protein ComGB -
  JNE45_RS11450 (JNE45_11450) comGA 2255836..2256906 (-) 1071 WP_238409347.1 competence type IV pilus ATPase ComGA Machinery gene
  JNE45_RS11455 (JNE45_11455) - 2257084..2257959 (-) 876 WP_095409007.1 STAS domain-containing protein -
  JNE45_RS11465 (JNE45_11465) - 2258183..2258563 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  JNE45_RS11470 (JNE45_11470) - 2258776..2259018 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -
  JNE45_RS11475 (JNE45_11475) - 2259066..2259704 (-) 639 WP_095409008.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10709.66 Da        Isoelectric Point: 7.3837

>NTDB_id=532053 JNE45_RS11440 WP_048239211.1 2254505..2254798(-) (comGC) [Bacillus safensis strain F6]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQAIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIVIQNGHVKHE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=532053 JNE45_RS11440 WP_048239211.1 2254505..2254798(-) (comGC) [Bacillus safensis strain F6]
ATGAATGATAAAGGATTTACCCTGTTAGAAATGTTAATTGTCATGCTCGTAATATCCATTCTTTTACTCATTACCATACC
GAATATCACACGTCATCACCAAGCTATTCAGGCAAAGGGCTGTGAAGGGCTCAAATCAATGGTCAGTACACAAGTGATGG
CATATGAATTGGAGCATGATGGGAAGACGCCATCTTTAGCTGAATTAGAAAAAGAAGGTTATGTCAAAAAGGGGTTAACT
TGTCCTAATGGAAAAGCGATTGTCATTCAAAACGGCCACGTGAAGCATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

67.01

100

0.67
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392