Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JNE45_RS00590 Genome accession   NZ_CP069061
Coordinates   109546..110925 (+) Length   459 a.a.
NCBI ID   WP_203129126.1    Uniprot ID   -
Organism   Bacillus safensis strain F6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 104546..115925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE45_RS00570 (JNE45_00570) - 104888..105352 (+) 465 WP_003217184.1 CtsR family transcriptional regulator -
  JNE45_RS00575 (JNE45_00575) - 105367..105924 (+) 558 WP_203129122.1 UvrB/UvrC motif-containing protein -
  JNE45_RS00580 (JNE45_00580) - 105929..107020 (+) 1092 WP_203129124.1 protein arginine kinase -
  JNE45_RS00585 (JNE45_00585) clpC 107017..109452 (+) 2436 WP_048240170.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  JNE45_RS00590 (JNE45_00590) radA 109546..110925 (+) 1380 WP_203129126.1 DNA repair protein RadA Machinery gene
  JNE45_RS00595 (JNE45_00595) disA 110928..112007 (+) 1080 WP_024425581.1 DNA integrity scanning diadenylate cyclase DisA -
  JNE45_RS00600 (JNE45_00600) - 112161..113261 (+) 1101 WP_095407564.1 PIN/TRAM domain-containing protein -
  JNE45_RS00605 (JNE45_00605) ispD 113275..113964 (+) 690 WP_003217158.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  JNE45_RS00610 (JNE45_00610) ispF 113968..114444 (+) 477 WP_003216928.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50021.54 Da        Isoelectric Point: 7.3829

>NTDB_id=532024 JNE45_RS00590 WP_203129126.1 109546..110925(+) (radA) [Bacillus safensis strain F6]
MAKTKSKFICQSCGYESAKWMGKCPGCGTWNSMIEEVVRKEPANRRSAFNHSVQTIQKPSPISAIETSEEPRIKTNLEEF
NRVLGSGIVKGSLVLIGGDPGIGKSTLLLQVSAQLSDKNQNVLYISGEESIKQTKLRADRLGIESASLHVLAETDMEYIT
SAIQEMKPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAQLMKIAKTNGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNELGIFEMREEGLTEVLNPSEIFLEERSAGVSGSCVVASMEGTRPVLVEIQALISPTSF
GNPRRMATGLDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAVSIASSFKDAAPHQADCFIGEVGLT
GEVRRVSRIEQRVQEAAKLGFKRMFIPQANIDGWKKPRGIELVGVENVAEALRISLGGS

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=532024 JNE45_RS00590 WP_203129126.1 109546..110925(+) (radA) [Bacillus safensis strain F6]
ATGGCTAAGACAAAATCAAAATTTATATGCCAATCGTGCGGTTATGAGTCAGCCAAATGGATGGGGAAATGCCCAGGCTG
CGGCACGTGGAACAGTATGATAGAAGAGGTCGTTCGCAAAGAGCCGGCAAACCGTCGAAGTGCTTTTAATCATTCTGTTC
AAACCATTCAAAAACCTTCACCTATATCTGCAATTGAAACATCCGAAGAACCCCGAATTAAAACGAATTTAGAAGAATTT
AACCGAGTATTAGGAAGTGGAATTGTCAAAGGCTCTCTTGTTCTCATTGGCGGAGATCCTGGGATTGGGAAGTCCACATT
ATTATTACAAGTATCAGCACAGCTCTCAGACAAAAATCAGAATGTGTTATACATATCTGGTGAGGAGTCCATTAAACAAA
CGAAGCTAAGAGCGGACCGCCTTGGCATTGAAAGCGCCTCTTTACATGTTTTGGCTGAAACCGATATGGAGTATATAACG
TCTGCTATACAGGAGATGAAACCTGCTTTTGTTGTGGTGGATTCGATTCAAACCGTTTATCAAAGCGATATTACGTCAGC
TCCCGGTTCTGTATCTCAAGTAAGAGAATGTACAGCACAGCTGATGAAAATTGCCAAGACAAATGGTATTCCTATTTTTA
TCGTTGGTCACGTGACCAAAGAAGGCTCAATCGCAGGTCCACGCCTTTTAGAGCATATGGTGGACACAGTTCTTTATTTT
GAAGGCGAGCGTCATCATACGTTTCGTATCTTACGGGCGGTCAAAAATCGATTTGGTTCAACGAATGAATTGGGAATTTT
TGAAATGAGAGAGGAAGGGCTCACGGAAGTATTAAACCCTTCAGAAATCTTTTTAGAAGAGCGGTCGGCAGGTGTATCTG
GTTCGTGTGTTGTTGCCTCAATGGAAGGAACAAGACCCGTACTTGTCGAGATACAGGCGTTAATTTCCCCGACAAGCTTT
GGGAATCCGCGCAGAATGGCCACTGGCCTTGATCATAATCGAGTGTCGCTCCTCATGGCAGTTTTAGAAAAACGCGTGGG
GCTGCTGCTGCAAAACCAAGATGCGTATTTAAAGGTCGCAGGCGGTGTGAAGCTTGACGAACCGGCGATTGACTTAGCCA
TTGCCGTCAGTATTGCATCAAGCTTTAAAGACGCAGCGCCGCATCAAGCGGATTGCTTTATAGGAGAGGTCGGTCTGACG
GGAGAAGTCAGAAGAGTATCAAGAATTGAACAGCGAGTGCAGGAAGCTGCGAAACTAGGATTCAAGCGAATGTTTATTCC
TCAAGCGAATATAGATGGATGGAAAAAGCCGAGAGGGATTGAGTTAGTTGGTGTAGAAAATGTAGCGGAGGCACTTCGAA
TTTCACTAGGGGGATCATAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(67-222)

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

87.336

99.782

0.871
  radA Streptococcus mitis NCTC 12261

61.589

98.693

0.608
  radA Streptococcus pneumoniae Rx1

61.589

98.693

0.608
  radA Streptococcus pneumoniae D39

61.589

98.693

0.608
  radA Streptococcus pneumoniae R6

61.589

98.693

0.608
  radA Streptococcus pneumoniae TIGR4

61.589

98.693

0.608
  radA Streptococcus mitis SK321

61.589

98.693

0.608