Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   JNE32_RS20655 Genome accession   NZ_CP068982
Coordinates   3914580..3915725 (+) Length   381 a.a.
NCBI ID   WP_029318693.1    Uniprot ID   -
Organism   Bacillus subtilis strain pb2441     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3909580..3920725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE32_RS20635 (JNE32_20535) albF 3909595..3910875 (+) 1281 WP_003227558.1 pitrilysin family protein -
  JNE32_RS20640 (JNE32_20540) albG 3910872..3911573 (+) 702 WP_038427991.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  JNE32_RS20645 (JNE32_20545) ywhL 3911579..3912952 (-) 1374 WP_038427992.1 YncE family protein -
  JNE32_RS20650 (JNE32_20550) ywhK 3912995..3914350 (-) 1356 WP_038427993.1 YncE family protein -
  JNE32_RS22660 - 3914347..3914577 (-) 231 WP_009968328.1 hypothetical protein -
  JNE32_RS20655 (JNE32_20555) rapF 3914580..3915725 (+) 1146 WP_029318693.1 response regulator aspartate phosphatase RapF Regulator
  JNE32_RS20660 (JNE32_20560) phrF 3915709..3915828 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  JNE32_RS20665 (JNE32_20565) - 3916081..3916560 (+) 480 WP_038427994.1 hypothetical protein -
  JNE32_RS20670 (JNE32_20570) - 3916709..3917497 (+) 789 WP_015714893.1 membrane protein -
  JNE32_RS20675 (JNE32_20575) - 3917484..3918158 (+) 675 WP_015714894.1 hypothetical protein -
  JNE32_RS20680 (JNE32_20580) - 3918174..3918965 (+) 792 WP_250354594.1 hypothetical protein -
  JNE32_RS20685 (JNE32_20585) - 3918968..3919615 (+) 648 WP_015714896.1 ABC transporter ATP-binding protein -
  JNE32_RS20690 (JNE32_20590) - 3919608..3920168 (+) 561 WP_015714897.1 hypothetical protein -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45594.05 Da        Isoelectric Point: 5.0624

>NTDB_id=531766 JNE32_RS20655 WP_029318693.1 3914580..3915725(+) (rapF) [Bacillus subtilis strain pb2441]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKENEAYNIRLLQCHSLFATNFLDLKQYEDAVSHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED
AITYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKMDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI
QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=531766 JNE32_RS20655 WP_029318693.1 3914580..3915725(+) (rapF) [Bacillus subtilis strain pb2441]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTGATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGAATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTTCTTGAGTACTATTTTAATTTCTTCAG
AGGCATGTATGAGTTGGATCAGCGGGAATATCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAAGCATATGAAATATACAAAGAAAATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATCTAAAACAGTATGAGGATGCCGTCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAG
CTGAAAAGCAGCCCCAATTAATGGGAAGAACTTTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATAACTTATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATGGATAAAGCTCATGAATACCATAGTAAGGGAATGGCTTATTCACAAA
AGGCCGGAGATGTAATATATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGAAGAAGCAATT
CAAGGATTTTTTGATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTATTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGTTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-65)

Tetratricopeptide repeat (TPR_12)

(223-290)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

98.95

100

0.99
  rapC Bacillus subtilis subsp. subtilis str. 168

57.368

99.738

0.572