Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   JNE32_RS19570 Genome accession   NZ_CP068982
Coordinates   3703985..3705142 (-) Length   385 a.a.
NCBI ID   WP_003227983.1    Uniprot ID   A0A199WDV9
Organism   Bacillus subtilis strain pb2441     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3698985..3710142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE32_RS19540 (JNE32_19445) yvyF 3699237..3699656 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  JNE32_RS19545 (JNE32_19450) comFC 3699730..3700452 (-) 723 WP_038427947.1 comF operon protein ComFC Machinery gene
  JNE32_RS19550 (JNE32_19455) comFB 3700416..3700712 (-) 297 WP_015483764.1 late competence protein ComFB -
  JNE32_RS19555 (JNE32_19460) comFA 3700772..3702163 (-) 1392 WP_038427948.1 ATP-dependent helicase ComFA Machinery gene
  JNE32_RS19560 (JNE32_19465) fakBA 3702269..3703114 (-) 846 WP_003244125.1 DegV family protein -
  JNE32_RS19565 (JNE32_19470) degU 3703212..3703902 (-) 691 Protein_3808 two-component system response regulator DegU -
  JNE32_RS19570 (JNE32_19475) degS 3703985..3705142 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  JNE32_RS19575 (JNE32_19480) yvyE 3705359..3706012 (+) 654 WP_003227979.1 YigZ family protein -
  JNE32_RS19580 (JNE32_19485) tagV 3706012..3707187 (+) 1176 WP_015251114.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  JNE32_RS19585 (JNE32_19490) tagO 3707260..3708336 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -
  JNE32_RS19590 (JNE32_19495) tuaH 3708481..3709674 (-) 1194 WP_072692828.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 44957.76 Da        Isoelectric Point: 6.2957

>NTDB_id=531762 JNE32_RS19570 WP_003227983.1 3703985..3705142(-) (degS) [Bacillus subtilis strain pb2441]
MNKTKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVQTRHARNRLSEVSR
NFHRFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLREVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGAEDGFQEIKNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGETEDQRLAPQFEVALFRLAQEAVSNALKHSESEEITVKVEI
TKDFVILMIKDNGKGFDLKEAKEKKNKSFGLLGMKERVDLLEGTMTIDSKIGLGTFIMIKVPLSL

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=531762 JNE32_RS19570 WP_003227983.1 3703985..3705142(-) (degS) [Bacillus subtilis strain pb2441]
ATGAATAAAACAAAGATGGATTCCAAAGTGCTGGATTCTATTTTGATGAAGATGCTGAAAACCGTTGACGGGAGCAAGGA
CGAAGTTTTTCAAATCGGGGAGCAGTCACGCCAGCAGTATGAACAGCTGGTCGAAGAACTGAAACAAATTAAACAGCAGG
TGTATGAAGTGATTGAGCTTGGCGATAAACTTGAAGTGCAAACTCGCCATGCGAGAAACCGTTTATCCGAGGTCAGCCGT
AATTTTCATAGATTCAGTGAAGAGGAAATCCGCAATGCTTATGAAAAAGCCCATAAGCTGCAGGTAGAATTGACGATGAT
CCAGCAGCGTGAGAAGCAATTGCGCGAACGGCGGGACGATTTGGAGCGCAGATTGCTAGGGCTTCAGGAAATCATTGAGC
GGTCAGAATCATTAGTAAGCCAAATTACAGTTGTGCTCAACTACTTGAATCAGGATTTGCGCGAAGTTGGACTGCTTCTT
GCTGATGCTCAGGCAAAACAGGATTTCGGCTTAAGAATCATTGAGGCGCAGGAAGAAGAGAGAAAAAGAGTCTCAAGAGA
AATCCATGACGGACCCGCTCAAATGCTGGCGAATGTTATGATGAGATCGGAATTAATCGAGCGGATTTTCCGTGACCGGG
GCGCAGAGGACGGATTCCAAGAAATTAAAAATCTACGCCAAAATGTTCGGAATGCCCTTTACGAAGTGAGAAGGATTATA
TATGATTTAAGACCGATGGCCCTTGATGACCTAGGCCTGATTCCAACTTTAAGAAAATATCTATATACAACCGAGGAATA
TAACGGGAAGGTCAAAATACATTTTCAGTGCATTGGAGAAACAGAGGATCAGAGGCTAGCGCCTCAGTTTGAGGTTGCGC
TCTTCAGGCTCGCACAGGAAGCTGTGTCTAATGCGCTAAAGCATTCTGAATCTGAAGAAATTACAGTCAAAGTTGAGATC
ACAAAGGATTTTGTGATTTTAATGATAAAAGATAACGGTAAAGGGTTCGACCTGAAGGAAGCGAAAGAGAAGAAAAACAA
ATCATTCGGCTTGCTGGGCATGAAAGAAAGAGTAGATTTATTGGAAGGAACGATGACAATAGATTCGAAAATAGGTCTTG
GGACATTTATTATGATTAAGGTTCCGTTATCTCTTTGA

Domains

Predicted by InterproScan.

Histidine kinase (HisKA_3)

(180-248)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WDV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

100

100

1