Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   JNE32_RS19555 Genome accession   NZ_CP068982
Coordinates   3700772..3702163 (-) Length   463 a.a.
NCBI ID   WP_038427948.1    Uniprot ID   -
Organism   Bacillus subtilis strain pb2441     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3695772..3707163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE32_RS19520 (JNE32_19425) flgL 3695943..3696839 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  JNE32_RS19525 (JNE32_19430) flgK 3696850..3698373 (-) 1524 WP_015714798.1 flagellar hook-associated protein FlgK -
  JNE32_RS19530 (JNE32_19435) flgN 3698392..3698874 (-) 483 WP_003227999.1 flagellar protein FlgN -
  JNE32_RS19535 (JNE32_19440) flgM 3698890..3699156 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  JNE32_RS19540 (JNE32_19445) yvyF 3699237..3699656 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  JNE32_RS19545 (JNE32_19450) comFC 3699730..3700452 (-) 723 WP_038427947.1 comF operon protein ComFC Machinery gene
  JNE32_RS19550 (JNE32_19455) comFB 3700416..3700712 (-) 297 WP_015483764.1 late competence protein ComFB -
  JNE32_RS19555 (JNE32_19460) comFA 3700772..3702163 (-) 1392 WP_038427948.1 ATP-dependent helicase ComFA Machinery gene
  JNE32_RS19560 (JNE32_19465) fakBA 3702269..3703114 (-) 846 WP_003244125.1 DegV family protein -
  JNE32_RS19565 (JNE32_19470) degU 3703212..3703902 (-) 691 Protein_3808 two-component system response regulator DegU -
  JNE32_RS19570 (JNE32_19475) degS 3703985..3705142 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  JNE32_RS19575 (JNE32_19480) yvyE 3705359..3706012 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52577.64 Da        Isoelectric Point: 10.0393

>NTDB_id=531761 JNE32_RS19555 WP_038427948.1 3700772..3702163(-) (comFA) [Bacillus subtilis strain pb2441]
MNVPVEKNSSFSKELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRRYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWKEENESNWKSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESSIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=531761 JNE32_RS19555 WP_038427948.1 3700772..3702163(-) (comFA) [Bacillus subtilis strain pb2441]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCAAAAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGAGATATAGATGTAATAGGTGCGGACAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGAAAGAGGAAAATGA
ATCAAACTGGAAGTCTATTAAGCTGACATGGGATGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGACT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCGCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCATTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCGTCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

99.568

100

0.996