Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   JNE32_RS17620 Genome accession   NZ_CP068982
Coordinates   3312797..3313441 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain pb2441     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3307797..3318441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE32_RS17585 (JNE32_17490) mrpB 3308989..3309420 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  JNE32_RS17590 (JNE32_17495) mrpC 3309420..3309761 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  JNE32_RS17595 (JNE32_17500) mrpD 3309754..3311235 (+) 1482 WP_029725869.1 Na+/H+ antiporter subunit D -
  JNE32_RS17600 (JNE32_17505) mrpE 3311241..3311717 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  JNE32_RS17605 (JNE32_17510) mrpF 3311717..3312001 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  JNE32_RS17610 (JNE32_17515) mnhG 3311985..3312359 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  JNE32_RS17615 (JNE32_17520) yuxO 3312398..3312778 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  JNE32_RS17620 (JNE32_17525) comA 3312797..3313441 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  JNE32_RS17625 (JNE32_17530) comP 3313522..3315834 (-) 2313 WP_072692758.1 histidine kinase Regulator
  JNE32_RS17630 (JNE32_17535) comX 3315850..3316071 (-) 222 WP_014114983.1 competence pheromone ComX -
  JNE32_RS17635 (JNE32_17540) - 3316068..3316937 (-) 870 WP_015714626.1 polyprenyl synthetase family protein -
  JNE32_RS17640 (JNE32_17545) degQ 3317122..3317262 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  JNE32_RS17645 (JNE32_17550) - 3317484..3317609 (+) 126 WP_121549029.1 hypothetical protein -
  JNE32_RS17650 (JNE32_17555) - 3317724..3318092 (+) 369 WP_038427878.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=531755 JNE32_RS17620 WP_003220716.1 3312797..3313441(-) (comA) [Bacillus subtilis strain pb2441]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=531755 JNE32_RS17620 WP_003220716.1 3312797..3313441(-) (comA) [Bacillus subtilis strain pb2441]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTTAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1