Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   JNE32_RS06120 Genome accession   NZ_CP068982
Coordinates   1182699..1183850 (+) Length   383 a.a.
NCBI ID   WP_029726275.1    Uniprot ID   -
Organism   Bacillus subtilis strain pb2441     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context


Location: 1177699..1188850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE32_RS06085 (JNE32_06055) yjbB 1178372..1179589 (+) 1218 WP_010886478.1 MFS transporter -
  JNE32_RS06090 (JNE32_06060) yjbC 1179753..1180331 (+) 579 WP_003244921.1 GNAT family N-acetyltransferase -
  JNE32_RS06095 (JNE32_06065) spx 1180512..1180907 (+) 396 WP_003245483.1 transcriptional regulator Spx -
  JNE32_RS06100 (JNE32_06070) yjbE 1180950..1181606 (-) 657 WP_003232944.1 TerC family protein -
  JNE32_RS06105 (JNE32_06075) - 1181776..1181916 (+) 141 WP_121572562.1 hypothetical protein -
  JNE32_RS06110 (JNE32_06080) mecA 1181883..1182539 (+) 657 WP_015383354.1 adaptor protein MecA Regulator
  JNE32_RS06115 (JNE32_06085) - 1182534..1182655 (-) 122 Protein_1139 hypothetical protein -
  JNE32_RS06120 (JNE32_06090) coiA 1182699..1183850 (+) 1152 WP_029726275.1 competence protein CoiA Machinery gene
  JNE32_RS06125 (JNE32_06095) pepF 1184080..1185909 (+) 1830 WP_174243753.1 oligoendopeptidase F -
  JNE32_RS06130 (JNE32_06100) - 1185947..1186114 (-) 168 WP_003244944.1 hypothetical protein -
  JNE32_RS06135 (JNE32_06105) spxH 1186429..1187328 (-) 900 WP_003245184.1 protease adaptor protein SpxH -
  JNE32_RS06140 (JNE32_06110) bhbI 1187325..1187723 (-) 399 WP_003232928.1 group 2 truncated hemoglobin YjbI -
  JNE32_RS06145 (JNE32_06115) cwlQ 1187978..1188712 (-) 735 WP_029726274.1 bifunctional muramidase/murein lytic transglycosylase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 44801.93 Da        Isoelectric Point: 10.0034

>NTDB_id=531719 JNE32_RS06120 WP_029726275.1 1182699..1183850(+) (coiA) [Bacillus subtilis strain pb2441]
MFSAVTEDGQMFHLLGAQQNQKLKRRRFFCPVCGGELAVKLGLQKAPHFAHKQNKSCSIDIEPESAYHLEGKRQLYVWLK
TQRASPILEPYIRTINQRPDVMARIKEHMLAVEYQCATIAPDVFQKRTEGFKQEGIIPQWIMGYSRLKRTASSFYQLSAF
HWQFINASPYRELICYCPERRSFIRLSHIIPFYTNHSYSSVQTIPIHRAGAGDLFFTEPKPSIQYSGWTKAIHRFRHKPH
RFNSKETNRLRLLFYEKRQTPFSFLPTEVFVPVRKGAVFKSPVFVWQGFLYLFMTDLGGKRAPIRFSAVLQQCKLHIHNK
NIALRFECSEECLSEAVKQYIDFLCKKGFLRETQKEVYVLNQPAGGIHSMQDLIERDRSCFIE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=531719 JNE32_RS06120 WP_029726275.1 1182699..1183850(+) (coiA) [Bacillus subtilis strain pb2441]
TTGTTTAGTGCTGTGACTGAAGACGGCCAAATGTTTCACCTTCTAGGCGCTCAGCAAAACCAGAAATTAAAGCGGAGACG
GTTCTTCTGTCCGGTATGCGGGGGAGAGCTAGCTGTGAAGCTTGGACTTCAAAAAGCGCCGCATTTTGCCCATAAACAGA
ACAAGTCCTGCTCCATAGACATCGAACCGGAAAGCGCCTACCACTTAGAAGGAAAAAGACAGCTGTATGTATGGCTGAAA
ACGCAACGGGCTTCACCAATATTGGAGCCGTATATAAGGACAATCAACCAAAGACCAGACGTCATGGCAAGGATCAAGGA
GCATATGCTTGCTGTTGAATATCAATGCGCCACTATCGCTCCAGATGTCTTTCAAAAGCGGACAGAGGGCTTCAAACAAG
AAGGAATCATCCCGCAGTGGATTATGGGATACAGCCGCTTAAAACGGACTGCTTCGTCCTTTTATCAGCTTTCAGCTTTT
CATTGGCAGTTTATCAATGCAAGTCCATACAGAGAACTGATATGTTATTGTCCTGAAAGGCGTTCTTTTATCCGGCTCAG
CCACATCATTCCATTCTACACAAACCATTCTTATTCCTCAGTCCAAACGATCCCTATCCATCGGGCAGGTGCAGGCGATC
TTTTTTTCACTGAACCGAAACCCTCAATTCAATATTCAGGCTGGACGAAAGCGATTCACCGTTTTCGCCATAAACCCCAT
CGGTTTAATTCAAAGGAAACAAATCGCCTTAGGCTGCTGTTTTATGAGAAGCGGCAGACGCCTTTTTCTTTTCTGCCGAC
TGAAGTGTTTGTTCCTGTTAGAAAAGGGGCAGTTTTTAAGAGTCCGGTTTTTGTGTGGCAGGGGTTTCTTTATTTGTTTA
TGACGGATCTTGGAGGTAAACGTGCGCCAATTCGTTTTTCAGCCGTTTTGCAGCAGTGCAAACTGCACATTCATAATAAG
AACATTGCACTCAGGTTCGAATGCAGCGAAGAGTGTCTTTCAGAAGCGGTTAAACAGTATATTGATTTTTTGTGCAAGAA
GGGATTTTTAAGGGAGACTCAGAAAGAAGTATATGTGCTGAATCAGCCTGCAGGTGGCATACACTCCATGCAGGATCTCA
TAGAAAGAGACCGCAGCTGTTTTATAGAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

98.928

97.389

0.963