Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   K9N54_RS02735 Genome accession   NZ_CP083361
Coordinates   589831..590559 (-) Length   242 a.a.
NCBI ID   WP_005460312.1    Uniprot ID   Q87S66
Organism   Vibrio parahaemolyticus strain 20-082E4     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 584831..595559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9N54_RS02710 (K9N54_02715) trpR 585218..585529 (+) 312 WP_005497218.1 trp operon repressor -
  K9N54_RS02715 (K9N54_02720) yjjX 585578..586111 (-) 534 WP_021450232.1 inosine/xanthosine triphosphatase -
  K9N54_RS02720 (K9N54_02725) pheA 586136..587314 (-) 1179 WP_005468591.1 prephenate dehydratase -
  K9N54_RS02725 (K9N54_02730) hpf 587558..587884 (-) 327 WP_005468590.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  K9N54_RS02730 (K9N54_02735) - 588215..589696 (-) 1482 WP_025792747.1 lytic transglycosylase F -
  K9N54_RS02735 (K9N54_02740) comL 589831..590559 (-) 729 WP_005460312.1 outer membrane protein assembly factor BamD Machinery gene
  K9N54_RS02740 (K9N54_02745) rluD 590696..591673 (+) 978 WP_025792749.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  K9N54_RS02745 (K9N54_02750) pgeF 591675..592403 (+) 729 WP_025557874.1 peptidoglycan editing factor PgeF -
  K9N54_RS02750 (K9N54_02755) clpC 592551..595124 (+) 2574 WP_005460310.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27848.79 Da        Isoelectric Point: 5.8151

>NTDB_id=531705 K9N54_RS02735 WP_005460312.1 589831..590559(-) (comL) [Vibrio parahaemolyticus strain 20-082E4]
MKRQTLTGLLAVSLLFGCASKEEIVPDVPPSELYADAQVSLQSGNWLSAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFMRLNPTHEKMDWVLYMRGLSHMAQDRNFMHDLFSIDRSDRDPEPVKKAFDDFKKLLQRYPNSPYAED
AQKRMVALKNRLANYDLATADFYLRREAWIAAINRSQELQKSFPDTEAARKSLEIQLEAYKQLQLEDAVARTEALIKLNP
VK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=531705 K9N54_RS02735 WP_005460312.1 589831..590559(-) (comL) [Vibrio parahaemolyticus strain 20-082E4]
ATGAAACGTCAGACTTTAACAGGCCTTTTAGCGGTATCTCTTCTGTTTGGATGTGCAAGCAAAGAAGAAATCGTTCCTGA
TGTGCCACCTTCGGAACTGTATGCAGACGCACAAGTCTCACTTCAAAGTGGCAACTGGCTTTCTGCGATTGAGAAACTGG
AAGCGTTAGACTCACGTTACCCATTTGGTGCCTACTCTGAACAGGTGCAACTTGACCTTATTTACGCATACTACAAAAAC
GACGACCTAGCGTTAGGCTTAGCAACCATCTCTCGCTTTATGCGCCTAAACCCGACCCATGAAAAAATGGACTGGGTACT
TTACATGCGTGGCCTGAGCCACATGGCTCAAGATCGTAACTTTATGCACGACCTGTTTAGCATCGATCGTAGCGACCGCG
ACCCAGAGCCCGTGAAAAAAGCATTTGATGACTTTAAGAAGCTGCTTCAACGTTATCCAAACAGCCCATATGCGGAAGAT
GCACAAAAACGCATGGTGGCCTTGAAAAACCGCTTGGCGAATTACGATTTAGCTACCGCTGATTTTTACCTTCGCCGTGA
AGCATGGATCGCTGCCATTAACCGTAGCCAAGAGCTTCAAAAATCATTCCCTGATACAGAAGCAGCTCGCAAATCGTTAG
AAATTCAGCTGGAAGCCTACAAGCAGCTGCAACTAGAAGATGCCGTTGCAAGAACAGAAGCGCTCATTAAGCTAAATCCT
GTCAAATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87S66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

41.25

99.174

0.409
  comL Neisseria gonorrhoeae MS11

40.833

99.174

0.405