Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   K6U01_RS19030 Genome accession   NZ_CP083274
Coordinates   3968288..3969025 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain Rosetta2-DE3     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3963288..3974025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6U01_RS19015 (K6U01_18970) clpC 3963742..3966315 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  K6U01_RS19020 (K6U01_18975) yfiH 3966445..3967176 (-) 732 WP_000040127.1 purine nucleoside phosphorylase YfiH -
  K6U01_RS19025 (K6U01_18980) rluD 3967173..3968153 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  K6U01_RS19030 (K6U01_18985) comL 3968288..3969025 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  K6U01_RS19035 (K6U01_18990) raiA 3969296..3969637 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  K6U01_RS19040 (K6U01_18995) pheL 3969741..3969788 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  K6U01_RS19045 (K6U01_19000) pheA 3969886..3971046 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  K6U01_RS19050 (K6U01_19005) tyrA 3971089..3972210 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  K6U01_RS19055 (K6U01_19010) aroF 3972221..3973291 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  K6U01_RS19060 (K6U01_19015) yfiL 3973501..3973866 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=531684 K6U01_RS19030 WP_000197686.1 3968288..3969025(+) (comL) [Escherichia coli strain Rosetta2-DE3]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=531684 K6U01_RS19030 WP_000197686.1 3968288..3969025(+) (comL) [Escherichia coli strain Rosetta2-DE3]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376