Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   K9U36_RS19430 Genome accession   NZ_CP083273
Coordinates   4022763..4023500 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain BL21-RIPL     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4017763..4028500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9U36_RS19415 (K9U36_19370) clpC 4018217..4020790 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  K9U36_RS19420 (K9U36_19375) yfiH 4020920..4021651 (-) 732 WP_000040127.1 purine nucleoside phosphorylase YfiH -
  K9U36_RS19425 (K9U36_19380) rluD 4021648..4022628 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  K9U36_RS19430 (K9U36_19385) comL 4022763..4023500 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  K9U36_RS19435 (K9U36_19390) raiA 4023771..4024112 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  K9U36_RS19440 (K9U36_19395) pheL 4024216..4024263 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  K9U36_RS19445 (K9U36_19400) pheA 4024361..4025521 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  K9U36_RS19450 (K9U36_19405) tyrA 4025564..4026685 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  K9U36_RS19455 (K9U36_19410) aroF 4026696..4027766 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  K9U36_RS19460 (K9U36_19415) yfiL 4027976..4028341 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=531603 K9U36_RS19430 WP_000197686.1 4022763..4023500(+) (comL) [Escherichia coli strain BL21-RIPL]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=531603 K9U36_RS19430 WP_000197686.1 4022763..4023500(+) (comL) [Escherichia coli strain BL21-RIPL]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376