Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   K6T58_RS21090 Genome accession   NZ_CP083263
Coordinates   4344839..4345576 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain JNU     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4339839..4350576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6T58_RS21060 (K6T58_20985) yfiL 4339997..4340362 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  K6T58_RS21065 (K6T58_20990) aroF 4340572..4341642 (+) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  K6T58_RS21070 (K6T58_20995) tyrA 4341653..4342774 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  K6T58_RS21075 (K6T58_21000) pheA 4342817..4343977 (-) 1161 WP_000200100.1 bifunctional chorismate mutase/prephenate dehydratase -
  K6T58_RS21080 (K6T58_21005) pheL 4344076..4344123 (-) 48 WP_001700969.1 pheA operon leader peptide PheL -
  K6T58_RS21085 (K6T58_21010) raiA 4344227..4344568 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  K6T58_RS21090 (K6T58_21015) comL 4344839..4345576 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  K6T58_RS21095 (K6T58_21020) rluD 4345711..4346691 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  K6T58_RS21100 (K6T58_21025) yfiH 4346688..4347419 (+) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  K6T58_RS21105 (K6T58_21030) clpC 4347549..4350122 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=531436 K6T58_RS21090 WP_000197686.1 4344839..4345576(-) (comL) [Escherichia coli strain JNU]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=531436 K6T58_RS21090 WP_000197686.1 4344839..4345576(-) (comL) [Escherichia coli strain JNU]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376