Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   K8351_RS06175 Genome accession   NZ_CP082947
Coordinates   1146203..1147069 (+) Length   288 a.a.
NCBI ID   WP_002777377.1    Uniprot ID   A0ABP2NR16
Organism   Campylobacter coli strain C203016     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1141203..1152069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8351_RS06150 (K8351_06115) - 1141648..1142897 (-) 1250 Protein_1206 ComEC/Rec2 family competence protein -
  K8351_RS06155 (K8351_06120) - 1142897..1143454 (-) 558 WP_002788123.1 DedA family protein -
  K8351_RS06160 (K8351_06125) rny 1143465..1145018 (-) 1554 WP_002784377.1 ribonuclease Y -
  K8351_RS06165 (K8351_06130) - 1144939..1145565 (-) 627 WP_002777380.1 5-formyltetrahydrofolate cyclo-ligase -
  K8351_RS06170 (K8351_06135) - 1145646..1146203 (+) 558 WP_002777379.1 TlpA disulfide reductase family protein -
  K8351_RS06175 (K8351_06140) pilA 1146203..1147069 (+) 867 WP_002777377.1 signal recognition particle-docking protein FtsY Machinery gene
  K8351_RS06180 (K8351_06145) - 1147066..1148010 (-) 945 WP_052780904.1 GTP-binding protein -
  K8351_RS06185 (K8351_06150) - 1148003..1148338 (-) 336 WP_002777373.1 hypothetical protein -
  K8351_RS06190 (K8351_06155) - 1148380..1149261 (-) 882 WP_002781290.1 polysaccharide deacetylase -
  K8351_RS06195 (K8351_06160) - 1149264..1150115 (-) 852 WP_002784379.1 carbon-nitrogen hydrolase family protein -
  K8351_RS06200 (K8351_06165) radA/sms 1150251..1151591 (+) 1341 WP_223375554.1 DNA repair protein RadA Machinery gene

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31816.85 Da        Isoelectric Point: 5.1228

>NTDB_id=530859 K8351_RS06175 WP_002777377.1 1146203..1147069(+) (pilA) [Campylobacter coli strain C203016]
MFDFFKKGLAKTLESIVGVKGENKKITKDLLEEILLEADVAYEIVEEIIYYLPPSDEVKKEDLKRVMGSYFLYENKEFLD
EKPFVELILGVNGAGKTTSIAKLANLYKSQGQKVILGACDTFRAGAIEQLRLWSEKVGVDIVLTQQGHDPSAVAFDTISK
ARAKGFDKVIIDTAGRLQNQKNLANELEKIVRISAKAMPHAPHRKILVLDGTQGNAGILQAKAFNELVQLDGVIITKLDG
TAKGGALFSIARELELPILYIGVGEKMQDLIEFNAQNFLDTLLEGVFD

Nucleotide


Download         Length: 867 bp        

>NTDB_id=530859 K8351_RS06175 WP_002777377.1 1146203..1147069(+) (pilA) [Campylobacter coli strain C203016]
ATGTTTGATTTTTTTAAAAAAGGACTTGCAAAAACCCTTGAAAGTATAGTGGGTGTTAAAGGTGAAAATAAAAAAATTAC
CAAAGATTTACTAGAGGAAATTTTACTTGAAGCAGATGTGGCGTATGAGATCGTAGAAGAAATCATTTATTATTTACCAC
CCAGTGATGAGGTTAAAAAAGAAGATTTAAAGCGTGTGATGGGTTCTTATTTTCTTTACGAAAATAAAGAATTCTTAGAT
GAAAAGCCTTTTGTGGAGCTTATTTTAGGGGTAAATGGCGCGGGTAAAACCACGAGTATAGCTAAGCTTGCTAATTTATA
CAAAAGCCAAGGTCAAAAAGTGATTTTAGGCGCTTGTGATACTTTTAGGGCAGGGGCGATAGAGCAGCTAAGACTTTGGT
CTGAAAAAGTAGGGGTAGATATAGTTTTAACCCAACAAGGTCATGATCCTTCGGCGGTTGCTTTTGATACTATTAGCAAG
GCTAGAGCTAAGGGTTTTGATAAGGTTATCATCGATACAGCGGGTCGTTTGCAAAATCAAAAAAATTTAGCCAATGAGCT
AGAGAAAATCGTTAGAATTTCGGCTAAAGCTATGCCTCATGCCCCGCATAGAAAAATTTTAGTACTTGATGGTACTCAAG
GCAATGCCGGCATTTTACAAGCTAAAGCTTTTAATGAACTTGTTCAGCTTGATGGAGTTATTATTACTAAACTTGATGGC
ACAGCAAAGGGTGGAGCGCTTTTTAGTATAGCGCGTGAATTAGAACTTCCTATTTTGTATATAGGGGTGGGTGAAAAAAT
GCAAGATTTGATAGAATTTAATGCACAAAATTTCTTAGACACACTTTTAGAGGGTGTTTTTGATTAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(84-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

42.244

100

0.444