Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   JMJ48_RS10700 Genome accession   NZ_CP068761
Coordinates   2053250..2054503 (+) Length   417 a.a.
NCBI ID   WP_047919725.1    Uniprot ID   A0AAX2TQK3
Organism   Neisseria gonorrhoeae strain 20181204     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2048250..2059503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMJ48_RS10680 (JMJ48_10680) - 2049001..2050002 (+) 1002 WP_003691948.1 thiamine ABC transporter substrate-binding protein -
  JMJ48_RS10685 (JMJ48_10685) - 2050096..2050944 (+) 849 WP_003687000.1 mechanosensitive ion channel family protein -
  JMJ48_RS10690 (JMJ48_10690) - 2050970..2051452 (+) 483 WP_003694396.1 CinA family protein -
  JMJ48_RS10695 (JMJ48_10695) msrAB 2051536..2053104 (-) 1569 WP_003694393.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  JMJ48_RS10700 (JMJ48_10700) pilA 2053250..2054503 (+) 1254 WP_047919725.1 signal recognition particle-docking protein FtsY Machinery gene
  JMJ48_RS10705 (JMJ48_10705) - 2054766..2055448 (-) 683 Protein_2078 opacity family porin -
  JMJ48_RS10710 (JMJ48_10710) - 2055433..2055591 (-) 159 WP_202838298.1 hypothetical protein -
  JMJ48_RS12125 - 2055924..2056426 (-) 503 Protein_2080 pilin -
  JMJ48_RS12130 - 2056795..2056938 (-) 144 WP_025456021.1 hypothetical protein -
  JMJ48_RS10730 (JMJ48_10730) - 2057043..2057123 (-) 81 Protein_2082 pilin -
  JMJ48_RS10735 (JMJ48_10735) - 2057241..2057624 (-) 384 Protein_2083 pilin -
  JMJ48_RS10740 (JMJ48_10740) pilE 2057742..2058167 (-) 426 WP_202838300.1 pilin Machinery gene
  JMJ48_RS10745 (JMJ48_10745) lpxC 2058274..2059197 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 44359.71 Da        Isoelectric Point: 4.8123

>NTDB_id=530819 JMJ48_RS10700 WP_047919725.1 2053250..2054503(+) (pilA) [Neisseria gonorrhoeae strain 20181204]
MFSFFRRKKKQETPALEEAQVQETAAKVESEVAQIVGNIKEDVESLAESVKGRAESAVETVSGAVEQVKETVAEMPSEAG
EAAERVESAKEAVAETVGEAVGQVQEAVATTEEHKLGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLIT
GDMGMEATEYLMKDVRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIGKLAKY
FQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVTVISQTAGDSAAVCFDAVQAAKARGIDIVLADTAGRLPTQLHLMEEI
KKVKRVLQKAIPGAPHEIIVVLDANIGQNAVNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGI
DDLRPFDARAFVDALLD

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=530819 JMJ48_RS10700 WP_047919725.1 2053250..2054503(+) (pilA) [Neisseria gonorrhoeae strain 20181204]
ATGTTCAGCTTCTTCCGTCGCAAGAAAAAACAGGAAACGCCGGCTCTCGAGGAGGCCCAAGTTCAGGAAACCGCAGCAAA
AGTAGAATCTGAAGTTGCTCAAATAGTTGGAAATATTAAAGAAGATGTCGAATCTTTAGCAGAAAGCGTCAAAGGGCGGG
CCGAATCTGCCGTTGAAACCGTCAGCGGTGCGGTTGAACAGGTAAAGGAAACCGTTGCCGAGATGCCGTCTGAAGCAGGG
GAAGCGGCGGAACGCGTTGAATCCGCAAAAGAAGCTGTTGCCGAAACCGTCGGCGAGGCTGTCGGGCAAGTTCAAGAAGC
CGTTGCGACAACTGAAGAACACAAGCTCGGTTGGGCTGCGCGTTTGAAACAAGGCTTGGCCAAATCACGCGACAAAATGG
CGAAATCGCTGGCCGGCGTGTTCGGCGGCGGACAAATCGGCGAGGATTTGTACGAAGAGCTGGAAACCGTGCTGATTACC
GGCGATATGGGCATGGAGGCCACCGAATACCTGATGAAAGACGTGCGCGACCGCGTCAGCCTCAAAGGGCTGAAAGACGG
CAACGAATTGCGCGGCGCGTTGAAAGAAGCCTTGTACGACCTGATTAAGCCGTTGGAAAAACCGCTGGTCTTGCCCGAAA
CTAAAGAGCCTTTCGTGATTATGCTTGCCGGTATCAACGGCGCGGGCAAAACCACGTCTATCGGCAAACTCGCCAAATAT
TTCCAAGCGCAGGGCAAATCCGTATTGCTGGCGGCAGGCGATACTTTCCGCGCCGCCGCGCGCGAGCAGCTTCAGGCTTG
GGGCGGGCGCAACAATGTGACCGTGATTTCACAAACTGCGGGCGATTCCGCCGCCGTGTGCTTCGATGCCGTCCAAGCCG
CCAAAGCGCGCGGGATCGACATCGTGCTTGCCGACACCGCCGGCCGCCTGCCCACGCAGCTTCATTTGATGGAAGAAATC
AAAAAAGTGAAGCGCGTGCTGCAAAAAGCCATTCCCGGCGCGCCGCACGAAATTATCGTCGTACTCGATGCCAATATCGG
GCAAAACGCCGTCAACCAAGTCAAAGCCTTTGACGACGCATTGGGGCTGACGGGGCTTATCGTTACCAAACTCGACGGCA
CGGCAAAAGGCGGCATCCTCGCCGCGCTTGCTTCCGACCGCCCCGTCCCCGTCCGCTACATCGGCGTGGGCGAAGGCATA
GACGACCTGCGCCCGTTTGACGCGCGCGCGTTTGTGGACGCACTGCTGGATTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(217-416)

SRP54-type protein, helical bundle domain (SRP54_N)

(132-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

99.52

100

0.995