Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   JMJ48_RS10740 Genome accession   NZ_CP068761
Coordinates   2057742..2058167 (-) Length   141 a.a.
NCBI ID   WP_202838300.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 20181204     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2052742..2063167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMJ48_RS10700 (JMJ48_10700) pilA 2053250..2054503 (+) 1254 WP_047919725.1 signal recognition particle-docking protein FtsY Machinery gene
  JMJ48_RS10705 (JMJ48_10705) - 2054766..2055448 (-) 683 Protein_2078 opacity family porin -
  JMJ48_RS10710 (JMJ48_10710) - 2055433..2055591 (-) 159 WP_202838298.1 hypothetical protein -
  JMJ48_RS12125 - 2055924..2056426 (-) 503 Protein_2080 pilin -
  JMJ48_RS12130 - 2056795..2056938 (-) 144 WP_025456021.1 hypothetical protein -
  JMJ48_RS10730 (JMJ48_10730) - 2057043..2057123 (-) 81 Protein_2082 pilin -
  JMJ48_RS10735 (JMJ48_10735) - 2057241..2057624 (-) 384 Protein_2083 pilin -
  JMJ48_RS10740 (JMJ48_10740) pilE 2057742..2058167 (-) 426 WP_202838300.1 pilin Machinery gene
  JMJ48_RS10745 (JMJ48_10745) lpxC 2058274..2059197 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  JMJ48_RS10755 (JMJ48_10755) - 2059652..2060011 (-) 360 Protein_2086 pilin -
  JMJ48_RS10760 (JMJ48_10760) - 2060051..2060392 (-) 342 Protein_2087 pilin -
  JMJ48_RS10765 (JMJ48_10765) - 2060445..2060845 (-) 401 Protein_2088 pilin -
  JMJ48_RS10770 (JMJ48_10770) - 2060962..2061405 (-) 444 Protein_2089 pilin -
  JMJ48_RS10775 (JMJ48_10775) - 2061939..2062349 (-) 411 Protein_2090 pilin -
  JMJ48_RS10780 (JMJ48_10780) - 2062955..2063080 (+) 126 Protein_2091 IS110 family transposase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15047.66 Da        Isoelectric Point: 7.1078

>NTDB_id=530820 JMJ48_RS10740 WP_202838300.1 2057742..2058167(-) (pilE) [Neisseria gonorrhoeae strain 20181204]
MPTDPDSRPRGNDEAILLAEGQKSAVAGYCPNHGEWPEDNASAGVASTPTDIKGKYVQKVEVNNGVVTAQMNPSGVNKEI
QGKKLSLWAKRENGSVKWFCGQPVKRGNAKDDTVTADNGGKNNAIDTKHLPSTCRDEPTAT

Nucleotide


Download         Length: 426 bp        

>NTDB_id=530820 JMJ48_RS10740 WP_202838300.1 2057742..2058167(-) (pilE) [Neisseria gonorrhoeae strain 20181204]
GTGCCGACAGACCCGGATTCCCGCCCGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTGC
CGGGTATTGCCCGAATCACGGCGAATGGCCGGAAGACAACGCTTCTGCCGGCGTGGCATCCACCCCCACCGACATCAAAG
GCAAATATGTTCAGAAAGTTGAAGTCAACAACGGCGTCGTCACCGCCCAAATGAATCCAAGCGGCGTAAACAAAGAAATC
CAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCGG
CAACGCCAAAGACGACACCGTCACCGCCGACAACGGCGGCAAAAACAACGCCATCGACACCAAGCACCTGCCGTCAACCT
GCCGCGATGAACCAACTGCCACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

71.127

100

0.716
  pilE Neisseria gonorrhoeae MS11

68.571

99.291

0.681