Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   JM956_RS21910 Genome accession   NZ_CP068719
Coordinates   4298160..4299899 (-) Length   579 a.a.
NCBI ID   WP_000947761.1    Uniprot ID   A0A9W7UY90
Organism   Bacillus cereus strain 21155     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4293160..4304899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM956_RS21875 - 4293401..4293634 (+) 234 WP_001190210.1 DUF2627 domain-containing protein -
  JM956_RS21880 - 4293684..4294412 (-) 729 WP_000172585.1 glycerophosphodiester phosphodiesterase -
  JM956_RS21885 - 4294463..4294609 (+) 147 WP_000803575.1 YycC family protein -
  JM956_RS21890 - 4294850..4295405 (-) 556 Protein_4290 PRK06770 family protein -
  JM956_RS21900 spo0A 4295658..4296452 (-) 795 WP_011110369.1 sporulation transcription factor Spo0A Regulator
  JM956_RS21905 spoIVB 4296743..4298041 (-) 1299 WP_002164177.1 SpoIVB peptidase -
  JM956_RS21910 recN 4298160..4299899 (-) 1740 WP_000947761.1 DNA repair protein RecN Machinery gene
  JM956_RS21915 argR 4300164..4300613 (-) 450 WP_001032581.1 arginine repressor ArgR -
  JM956_RS21920 - 4300756..4301595 (-) 840 WP_000111872.1 TlyA family RNA methyltransferase -
  JM956_RS21925 dxs 4301599..4303491 (-) 1893 WP_000366452.1 1-deoxy-D-xylulose-5-phosphate synthase -
  JM956_RS21930 ispA 4303794..4304684 (-) 891 WP_000150373.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65803.92 Da        Isoelectric Point: 4.8627

>NTDB_id=530703 JM956_RS21910 WP_000947761.1 4298160..4299899(-) (recN) [Bacillus cereus strain 21155]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDEKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGDRIVKQL
DIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKLDEENELTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEVYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEKEIFTIENKDVHIETTKKQLKELESVILKEATLLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KREGNAEEPLVEGAPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=530703 JM956_RS21910 WP_000947761.1 4298160..4299899(-) (recN) [Bacillus cereus strain 21155]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAAGCATTAAATATTTCTTTTCAAAAAGGTTTAACGGTTTT
AAGCGGTGAAACAGGGGCCGGAAAATCGATTATTATTGATGCAATTAGTTTACTTGTAGGTGGCCGTGGGTCAGCAGAAT
TTGTTCGATATGGAACAGAAAAGGCTGAGATTGAAGGGTTATTTTATGTTGAAGATGAGAAGCATCCATGTATTGAAAAG
GCAGAAGAGTTAGATATAGAAATAGAAGATGGCATGATTATTTTAAAGCGTGATATTGCTGCGAACGGGAAGAGTGTATG
TCGTGTAAATGGGAAGCTTGTTACACTTAGCATATTAAAAGAAATTGGGAAAACACTTGTTGATATTCATGGACAGCATG
AAACGCAAGATTTAATGAATGAAGAACGACATCTGTTTATGCTTGATCATTTTGATGGGGATCGAATCGTTAAACAATTA
GATATATATCAAAACGTATACGCTGACTATGAAAAATTAAAAAAACAATTGAAATCGTTAAGTGAAAATGAACAACAAAT
GGCACATCGCTTAGATTTAATTCAGTTTCAGCATGAAGAAATTCGCAAGGCGGATTTAAAGCTGGATGAAGAAAATGAAT
TAACTGAGGAACGATTACAAATTTCTAATTTTGAAAAGATTTATAAAGCGTTAGGTGATGCATATCGTTCGTTAAGTGCC
GACGGACAAGGATTAGATAATGTAAGAAGTGCAATGGGGCAAATGGAAAGTATTACACATTTAGATGAAGTGTATCAAGA
GAATCATGATTCAATTGCAAATAGTTATTACTTATTAGAAGAGGTTGCCTATCAACTGAGAGAAAAGCTCGATATGATGG
AATATGATCCAAATCGTTTAGATGAAATCGAAACACGTTTGAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAAAAGGAAATTTTTACGATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAACAGTTGAAGGAATTAGAAAGTGTTATTCTGAAAGAAGCAACGTTGTTAAGTAATATGCGTCATGAGCTTG
CAGAACATCTTACAAATGCAATTCATCAGGAATTAAAAGAATTATATATGGAAAAAACGAAATTTGAAGTGAGAATTATG
AAGAGAGAAGGAAATGCAGAAGAGCCCCTTGTGGAAGGTGCACCGGTAAGACTTACGGCGGACGGTTACGATCATGTGGA
ATTTTATATTTCAACGAACCCAGGAGAGCCGCTAAAACCACTTTCAAAGGTTGCTTCTGGAGGAGAGTTATCTCGTATCA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGGGTTGCATCTGTTATTTTTGATGAAGTGGATACGGGTGTAAGT
GGCCGGGTCGCACAGGCTATTGCAGAAAAAATTTATCGAGTATCAGTAAACTCGCAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCGGATTCGCATTTATTTATTCGAAAACAAGTAGCGAATGATCGGACAATTACTTCGGTTACTG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTGGAAATTACAGATTTAACGACAGAGCAT
GCGAAAGAATTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.276

100

0.603