Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   JM956_RS21900 Genome accession   NZ_CP068719
Coordinates   4295658..4296452 (-) Length   264 a.a.
NCBI ID   WP_011110369.1    Uniprot ID   A0A9Q5QPF5
Organism   Bacillus cereus strain 21155     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 4290658..4301452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM956_RS21870 - 4291192..4293264 (-) 2073 WP_000810969.1 sigma-54-dependent Fis family transcriptional regulator -
  JM956_RS21875 - 4293401..4293634 (+) 234 WP_001190210.1 DUF2627 domain-containing protein -
  JM956_RS21880 - 4293684..4294412 (-) 729 WP_000172585.1 glycerophosphodiester phosphodiesterase -
  JM956_RS21885 - 4294463..4294609 (+) 147 WP_000803575.1 YycC family protein -
  JM956_RS21890 - 4294850..4295405 (-) 556 Protein_4290 PRK06770 family protein -
  JM956_RS21900 spo0A 4295658..4296452 (-) 795 WP_011110369.1 sporulation transcription factor Spo0A Regulator
  JM956_RS21905 spoIVB 4296743..4298041 (-) 1299 WP_002164177.1 SpoIVB peptidase -
  JM956_RS21910 recN 4298160..4299899 (-) 1740 WP_000947761.1 DNA repair protein RecN Machinery gene
  JM956_RS21915 argR 4300164..4300613 (-) 450 WP_001032581.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29415.18 Da        Isoelectric Point: 7.1175

>NTDB_id=530702 JM956_RS21900 WP_011110369.1 4295658..4296452(-) (spo0A) [Bacillus cereus strain 21155]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLTDKQPDVLVLDIIMPHLDGLAVLEKMRHIERLKQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKANAMIKRPLPSFRSATTVDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=530702 JM956_RS21900 WP_011110369.1 4295658..4296452(-) (spo0A) [Bacillus cereus strain 21155]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAACTAGTATCAATGTTAGAGAGCTATGTAGCCGCTCAAGA
TGATATGGAAGTAATCGGTACTGCTTATAATGGTCAAGAGTGTTTAAACTTATTAACAGATAAGCAACCTGATGTACTCG
TTTTAGATATTATTATGCCACACTTAGACGGTTTAGCTGTATTGGAAAAAATGCGACATATTGAAAGGTTAAAACAGCCT
AGCGTAATTATGTTGACGGCATTCGGGCAAGAAGATGTGACGAAAAAAGCTGTTGACTTAGGTGCCTCATATTTCATATT
AAAACCATTTGATATGGAGAATTTAACAAGTCATATTCGTCAAGTGAGTGGTAAAGCAAACGCTATGATTAAACGTCCAC
TACCATCATTCCGATCAGCAACAACAGTAGATGGAAAACCGAAAAACTTAGATGCGAGTATTACGAGTATCATTCATGAA
ATTGGTGTACCCGCTCATATTAAAGGATATATGTATTTACGAGAAGCGATTTCCATGGTATACAACGATATCGAATTATT
AGGATCGATTACGAAAGTATTGTATCCAGATATCGCAAAGAAATATAATACGACAGCGAGCCGTGTGGAGCGCGCAATTC
GTCACGCAATTGAAGTAGCGTGGAGCCGTGGGAATATTGATTCTATATCGTCCTTATTTGGTTATACAGTATCCATGTCA
AAAGCAAAACCTACGAACTCTGAGTTTATCGCAATGGTTGCGGATAAGTTGAGACTTGAACATAAAGCTAGCTGA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818