Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   JM955_RS21740 Genome accession   NZ_CP068717
Coordinates   4302919..4303962 (-) Length   347 a.a.
NCBI ID   WP_001013177.1    Uniprot ID   -
Organism   Bacillus cereus strain CH     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4297919..4308962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM955_RS21695 - 4298353..4298553 (-) 201 WP_000106083.1 YqzE family protein -
  JM955_RS21700 aroK 4298592..4299089 (-) 498 WP_000836649.1 shikimate kinase AroK -
  JM955_RS21705 - 4299205..4299855 (-) 651 WP_000183853.1 2OG-Fe(II) oxygenase -
  JM955_RS21710 comGG 4300029..4300400 (-) 372 WP_001214374.1 competence type IV pilus minor pilin ComGG -
  JM955_RS21715 comGF 4300397..4300867 (-) 471 WP_000923097.1 competence type IV pilus minor pilin ComGF -
  JM955_RS21720 - 4300837..4301139 (-) 303 WP_000829462.1 hypothetical protein -
  JM955_RS21725 comGD 4301132..4301587 (-) 456 WP_002094140.1 competence type IV pilus minor pilin ComGD -
  JM955_RS21730 comGC 4301584..4301883 (-) 300 WP_001243321.1 competence type IV pilus major pilin ComGC -
  JM955_RS21735 comGB 4301895..4302926 (-) 1032 WP_000475180.1 competence type IV pilus assembly protein ComGB -
  JM955_RS21740 comGA 4302919..4303962 (-) 1044 WP_001013177.1 competence type IV pilus ATPase ComGA Machinery gene
  JM955_RS21745 - 4304168..4304863 (+) 696 WP_000434124.1 helix-turn-helix transcriptional regulator -
  JM955_RS21750 - 4304990..4305232 (+) 243 WP_000375619.1 DUF2626 domain-containing protein -
  JM955_RS21755 - 4305340..4306734 (+) 1395 WP_001094344.1 L-cystine transporter -
  JM955_RS30580 - 4306814..4307206 (-) 393 Protein_4272 hypothetical protein -
  JM955_RS21765 - 4307294..4307509 (-) 216 WP_001008326.1 DUF3912 family protein -
  JM955_RS21770 - 4307763..4308074 (+) 312 WP_001093240.1 hypothetical protein -
  JM955_RS21775 - 4308109..4308597 (-) 489 WP_000764263.1 hypothetical protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39177.60 Da        Isoelectric Point: 8.8944

>NTDB_id=530654 JM955_RS21740 WP_001013177.1 4302919..4303962(-) (comGA) [Bacillus cereus strain CH]
MNGIEIFANTILKEACRVQASDLHIVPRQKDVAVQLRIGKDLMTRHCIKKEFGEKLVSHFKFLASMDIGEKRKPQNGSLY
LQIDGQEVYLRLSTLPTVYQESLVIRLHLQASVQPLSHLSLFPSTAAKLLSFLRYSQGLLVFTGPTGSGKTTTMYALLEV
IRKKKTRRIITLEDPVEKRSDDVLQIQINEKAGLTYETGLKAILRHDPDIILVGEIRDEETAKIAIRASLTGHLVMTTLH
TNDAKGAIIRFMDYGITRQEIEQSLLAVAAQRLVELKCPFCRGKCSTLCKSMRQVRQASIYELLYGYELKQALKEADGEC
VTYKHETLESSIRKGYALGFLEDDVYV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=530654 JM955_RS21740 WP_001013177.1 4302919..4303962(-) (comGA) [Bacillus cereus strain CH]
ATGAATGGGATTGAAATTTTTGCGAATACAATTTTAAAAGAAGCGTGTAGGGTACAAGCGTCAGATTTACATATTGTGCC
CCGGCAGAAGGATGTAGCGGTGCAACTACGTATAGGAAAAGATTTAATGACGAGACATTGTATTAAAAAGGAGTTTGGAG
AAAAACTTGTCTCACATTTTAAATTTTTAGCATCTATGGACATAGGAGAGAAACGGAAGCCACAGAATGGTTCGTTGTAT
TTGCAAATTGATGGACAAGAAGTGTATTTACGCCTTTCAACACTTCCAACAGTATATCAAGAAAGTCTCGTTATTCGCCT
TCATTTACAAGCATCTGTGCAGCCCTTATCACATCTTTCGTTATTTCCAAGTACGGCAGCAAAACTACTCTCGTTTTTAC
GCTATTCACAGGGGCTACTCGTGTTTACTGGACCGACTGGTTCTGGGAAGACAACGACAATGTATGCATTATTAGAGGTA
ATTAGAAAAAAGAAAACACGTCGCATCATTACACTTGAAGATCCGGTTGAAAAAAGAAGTGACGATGTATTACAAATTCA
AATAAATGAAAAAGCGGGTCTCACATATGAAACAGGATTAAAGGCTATTTTACGTCATGATCCAGATATTATTTTAGTCG
GTGAAATCCGTGATGAAGAAACAGCAAAAATAGCTATAAGAGCAAGTTTGACAGGACATTTAGTCATGACAACGTTGCAT
ACGAATGATGCGAAAGGAGCAATCATTCGTTTCATGGATTATGGTATAACGAGGCAAGAGATTGAACAGTCTTTATTGGC
TGTAGCTGCACAGCGACTTGTCGAATTGAAGTGTCCGTTTTGCAGAGGAAAGTGCTCAACTTTATGTAAATCAATGAGGC
AAGTAAGGCAAGCAAGCATTTATGAGCTGCTATATGGATATGAGTTAAAACAAGCGCTTAAAGAAGCAGATGGAGAATGT
GTTACTTACAAACATGAGACTTTAGAATCGTCAATAAGAAAAGGATATGCTTTAGGTTTTTTAGAAGATGATGTTTATGT
TTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

56.196

100

0.562
  pilB Haemophilus influenzae 86-028NP

39.752

92.795

0.369