Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   K8P05_RS07360 Genome accession   NZ_CP082874
Coordinates   1422042..1422422 (+) Length   126 a.a.
NCBI ID   WP_002776373.1    Uniprot ID   A0ABN0ERI9
Organism   Campylobacter coli strain FDAARGOS_1466     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1417042..1427422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8P05_RS07340 (K8P05_07270) - 1417172..1419106 (-) 1935 WP_223416885.1 ribonuclease R family protein -
  K8P05_RS07345 (K8P05_07275) ilvC 1419229..1420251 (+) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  K8P05_RS07350 (K8P05_07280) - 1420254..1421285 (+) 1032 WP_002820415.1 divergent polysaccharide deacetylase family protein -
  K8P05_RS07355 (K8P05_07285) dprA 1421275..1422045 (+) 771 WP_223416886.1 DNA-processing protein DprA Machinery gene
  K8P05_RS07360 (K8P05_07290) dprB 1422042..1422422 (+) 381 WP_002776373.1 Holliday junction resolvase RuvX Machinery gene
  K8P05_RS07365 (K8P05_07295) - 1422433..1423287 (+) 855 WP_370450124.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  K8P05_RS07370 (K8P05_07300) msrA 1423510..1424010 (-) 501 WP_002793323.1 peptide-methionine (S)-S-oxide reductase MsrA -
  K8P05_RS07375 (K8P05_07305) ppa 1424058..1424576 (-) 519 WP_223416887.1 inorganic diphosphatase -
  K8P05_RS07380 (K8P05_07310) - 1424586..1425161 (-) 576 WP_223416888.1 adenylate kinase -
  K8P05_RS07385 (K8P05_07315) aspS 1425158..1426909 (-) 1752 WP_002781656.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13949.38 Da        Isoelectric Point: 9.5520

>NTDB_id=530625 K8P05_RS07360 WP_002776373.1 1422042..1422422(+) (dprB) [Campylobacter coli strain FDAARGOS_1466]
MRALALDVGLKRIGVALCIDKIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIPKGGSSEEEMTRRIKHFVSLLEF
DKEIRFVDESGTSKEALGYGVANTRKKDAKLDSLAALIMIKDYFGI

Nucleotide


Download         Length: 381 bp        

>NTDB_id=530625 K8P05_RS07360 WP_002776373.1 1422042..1422422(+) (dprB) [Campylobacter coli strain FDAARGOS_1466]
ATGAGAGCTTTGGCCTTAGATGTGGGTTTAAAGCGTATAGGCGTGGCGCTTTGTATAGATAAAATCGCCATTCCTTTAGA
AGGTATAATCAGAAAAAACCGCAACCAAGCTGCAAATGAAGTTAAAAATTTACTTCAAATTCATGATATTTCTTTATTGA
TTGTAGGTATTCCTAAGGGAGGATCGAGCGAAGAAGAAATGACAAGGCGTATCAAGCATTTTGTATCTTTGCTTGAATTC
GATAAAGAAATTCGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGGATATGGTGTGGCTAATACACGCAAAAA
AGATGCCAAGCTAGACTCTTTAGCAGCTTTAATCATGATAAAGGATTATTTTGGAATATAA

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

42.063

100

0.421