Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   JMB28_RS09510 Genome accession   NZ_CP068712
Coordinates   2009329..2009892 (-) Length   187 a.a.
NCBI ID   WP_202847850.1    Uniprot ID   -
Organism   Staphylococcus shinii strain 14AME19     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2004329..2014892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMB28_RS09490 (JMB28_09490) - 2005044..2005535 (-) 492 WP_039067633.1 hypothetical protein -
  JMB28_RS09495 (JMB28_09495) - 2007198..2008397 (+) 1200 WP_069792981.1 ATP-grasp domain-containing protein -
  JMB28_RS09510 (JMB28_09510) comK/comK1 2009329..2009892 (-) 564 WP_202847850.1 competence protein ComK Regulator
  JMB28_RS09515 (JMB28_09515) - 2010145..2010363 (+) 219 WP_017722274.1 IDEAL domain-containing protein -
  JMB28_RS09520 (JMB28_09520) - 2010464..2011450 (-) 987 WP_069792982.1 lipoate--protein ligase -
  JMB28_RS09525 (JMB28_09525) - 2011650..2011835 (+) 186 WP_002483735.1 DUF2187 family protein -
  JMB28_RS09530 (JMB28_09530) - 2011841..2012443 (+) 603 WP_039067718.1 CPBP family glutamic-type intramembrane protease -
  JMB28_RS09535 (JMB28_09535) - 2012492..2014000 (-) 1509 WP_039067719.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 21887.25 Da        Isoelectric Point: 9.5421

>NTDB_id=530614 JMB28_RS09510 WP_202847850.1 2009329..2009892(-) (comK/comK1) [Staphylococcus shinii strain 14AME19]
MIQPYIIKKGDMVLQPCNLATGQYEGSYLLRYKADSQIIKERVAKVIDRSCRFYGSSYVFKKEDTMRITGISSKPPILFT
PLFPTYFFPTHSDRKADNTWINIHYVHNIRPLKERKCKVTFVDNQSIVANISAHSMHHQYLNGIYYYYMMDRAARVATFD
PDSPIDYTKPQLNIYEALAKYSLFEPK

Nucleotide


Download         Length: 564 bp        

>NTDB_id=530614 JMB28_RS09510 WP_202847850.1 2009329..2009892(-) (comK/comK1) [Staphylococcus shinii strain 14AME19]
ATGATTCAACCATATATTATTAAAAAAGGTGATATGGTTTTGCAGCCATGTAATTTAGCAACTGGACAATATGAAGGTAG
CTACTTATTAAGGTATAAGGCCGATAGTCAAATCATTAAAGAACGCGTAGCTAAGGTTATCGACCGTTCCTGTAGATTTT
ATGGTAGCAGTTATGTGTTTAAAAAGGAAGATACCATGCGTATCACTGGTATAAGTAGTAAGCCGCCAATTTTATTCACT
CCACTATTTCCCACATATTTCTTCCCCACACACTCTGATCGTAAAGCAGATAATACTTGGATCAACATCCATTATGTCCA
TAATATTAGACCACTTAAAGAAAGGAAATGTAAGGTTACTTTTGTAGACAATCAAAGCATCGTAGCTAATATTTCAGCTC
ATAGTATGCATCACCAATATTTAAATGGTATATACTATTATTATATGATGGATAGGGCAGCTAGAGTCGCTACATTTGAC
CCTGATTCACCAATTGATTATACTAAACCGCAATTAAATATATATGAAGCATTAGCAAAATATTCATTATTTGAACCAAA
ATAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

55.738

97.861

0.545
  comK/comK1 Staphylococcus aureus N315

55.738

97.861

0.545