Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JMB28_RS04650 Genome accession   NZ_CP068712
Coordinates   1000272..1000691 (+) Length   139 a.a.
NCBI ID   WP_069793451.1    Uniprot ID   -
Organism   Staphylococcus shinii strain 14AME19     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 995272..1005691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMB28_RS04620 (JMB28_04620) atpD 995306..996718 (+) 1413 WP_069793449.1 F0F1 ATP synthase subunit beta -
  JMB28_RS04625 (JMB28_04625) - 996738..997142 (+) 405 WP_039069063.1 F0F1 ATP synthase subunit epsilon -
  JMB28_RS04630 (JMB28_04630) - 997494..997727 (+) 234 WP_039069062.1 DUF1146 family protein -
  JMB28_RS04635 (JMB28_04635) murA 997834..999099 (+) 1266 WP_069793450.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  JMB28_RS04640 (JMB28_04640) fabZ 999157..999594 (+) 438 WP_039069059.1 3-hydroxyacyl-ACP dehydratase FabZ -
  JMB28_RS04645 (JMB28_04645) - 999641..1000081 (-) 441 WP_039069058.1 YwpF-like family protein -
  JMB28_RS04650 (JMB28_04650) ssb 1000272..1000691 (+) 420 WP_069793451.1 single-stranded DNA-binding protein Machinery gene
  JMB28_RS04655 (JMB28_04655) - 1001118..1001822 (+) 705 WP_039069056.1 transglycosylase family protein -
  JMB28_RS04660 (JMB28_04660) tenA 1002248..1002928 (+) 681 WP_039069055.1 thiaminase II -
  JMB28_RS04665 (JMB28_04665) thiD 1002930..1003751 (+) 822 WP_202847922.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  JMB28_RS04670 (JMB28_04670) thiM 1003744..1004532 (+) 789 WP_069792681.1 hydroxyethylthiazole kinase -
  JMB28_RS04675 (JMB28_04675) thiE 1004535..1005173 (+) 639 WP_039069052.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 16200.63 Da        Isoelectric Point: 7.1068

>NTDB_id=530596 JMB28_RS04650 WP_069793451.1 1000272..1000691(+) (ssb) [Staphylococcus shinii strain 14AME19]
MINNIVIVGRLTKDPKIYEKEGSKLATMCVAITRNYRDQEQNTICDYLYCKAVGKIANNIELYLNKGSLVGITGRMQSRK
YEKEGQMHFVSELFIETIKFMSPRNKDEVNELREIFSIEQVHNSNKEITLRDNDIYEIV

Nucleotide


Download         Length: 420 bp        

>NTDB_id=530596 JMB28_RS04650 WP_069793451.1 1000272..1000691(+) (ssb) [Staphylococcus shinii strain 14AME19]
ATGATTAACAACATTGTCATAGTAGGGAGATTAACCAAAGACCCTAAAATTTACGAAAAGGAGGGGAGTAAGTTAGCTAC
AATGTGTGTAGCAATAACAAGAAATTATAGAGATCAAGAACAAAACACCATCTGTGATTATTTATATTGTAAGGCTGTTG
GTAAAATAGCTAATAATATCGAACTATATTTAAATAAAGGATCACTAGTGGGAATCACTGGTCGAATGCAATCAAGAAAA
TATGAAAAAGAAGGGCAGATGCATTTTGTATCAGAACTTTTTATTGAAACTATTAAATTTATGTCTCCAAGAAACAAAGA
TGAAGTTAATGAATTACGTGAAATATTCTCTATAGAGCAAGTTCATAATTCAAATAAAGAAATAACTTTACGAGATAATG
ATATATACGAAATTGTATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

64.486

76.978

0.496
  ssb Staphylococcus aureus MW2

63.551

76.978

0.489