Detailed information NTG0530591

Bioinformatically predicted

Overview

• Name: ccrB
• Type: Machinery gene
• Locus tag: JMB28_RS00180
• Genome accession: NZ_CP068712
• Coordinates: 42418..44043 (-)
• Length: 541 a.a.
• NCBI ID: WP_202847884.1
• Uniprot ID: -
• Organism: Staphylococcus shinii strain 14AME19
• Function: promote SCCmec transfer (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
SCCmec	44065..45414	42418..44043	flank	22

Gene organization within MGE regions

Location: 42418..45414

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JMB28_RS00180 (JMB28_00180)	ccrB	42418..44043 (-)	1626	WP_202847884.1	recombinase family protein	Machinery gene
JMB28_RS00185 (JMB28_00185)	ccrA	44065..45414 (-)	1350	WP_202847885.1	recombinase family protein	Machinery gene

Sequence

Protein

• Length: 541 a.a.
• Molecular weight: 62129.04 Da
• Isoelectric Point: 9.7113

>NTDB_id=530591 JMB28_RS00180 WP_202847884.1 42418..44043(-) (ccrB) [Staphylococcus shinii strain 14AME19]
MNEMKKKRIGAYIRVSTERQVEGYSIDGQITQIEQFCQFNGYDLVDIYADRGISGKSMNRPALQRMLQDAKNGKLDCVIV
YKINRLARNTSDLLTIVEELHRQNVEFFSLSERMEVKNSTGKLLLNILASFSEFERNTILENIYTGQHQRALEGYYQGNI
PLGYSNIPDNKKELMINQHEANIVNYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSISAVTYILSNPFYIGKIQFAKY
KDWNDKRRKGLNDKPVIAEGKHSPIIGKDLWDKVQARKKQVSKKLQVHGKGTNLLTGIIFCEKCGAAYAASNTTNTLKDG
TKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVLKQVVERVNQENQIDVASLNHDIAYKQQQFDE
INTKLKNLIQTIEDNPDLTSALKPTIHQYETQLNDITNQINQLKHQQNQEKPSYDTKQIAALLQQIFQNVESMDKAQLKA
LYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNDTPLDEVLLSTSSLFLPQTLFLQI

Nucleotide

• Length: 1626 bp

>NTDB_id=530591 JMB28_RS00180 WP_202847884.1 42418..44043(-) (ccrB) [Staphylococcus shinii strain 14AME19]
ATGAATGAAATGAAGAAGAAGAGAATCGGAGCGTACATTCGCGTGTCCACAGAGAGACAAGTGGAAGGTTATAGTATAGA
TGGTCAAATTACACAAATAGAGCAGTTTTGCCAATTTAATGGTTATGACCTCGTTGATATATACGCAGATCGGGGTATTT
CTGGAAAATCTATGAATCGCCCTGCACTACAGCGCATGTTACAAGACGCAAAAAATGGAAAGTTAGACTGTGTGATTGTT
TATAAAATAAATCGTTTAGCACGTAATACTTCTGACTTACTGACAATCGTCGAAGAACTACATCGTCAAAATGTTGAATT
TTTCAGCTTGTCTGAACGCATGGAAGTCAAAAATTCGACAGGTAAATTATTATTAAATATACTTGCAAGTTTTTCCGAAT
TTGAAAGAAATACCATTTTAGAGAATATTTACACCGGACAGCATCAAAGAGCCTTAGAAGGCTATTATCAAGGCAATATT
CCTTTAGGATATTCTAATATACCTGATAATAAAAAAGAATTAATGATTAACCAACATGAAGCCAATATTGTGAACTATAT
CTTTGAATCATACGCCAAAGGTCATGGATATCGTAAAATTGCCAATGCACTCAACCATAAAGGATATGTAACTAAGAAAG
GTAATCCATTTAGTATTTCAGCTGTTACTTATATTCTCTCAAATCCATTCTATATTGGTAAAATCCAATTCGCGAAATAC
AAAGATTGGAATGATAAACGTCGTAAAGGCTTGAATGATAAGCCAGTAATCGCTGAAGGTAAGCACTCCCCTATTATTGG
CAAAGACTTATGGGATAAAGTCCAAGCACGTAAGAAGCAAGTAAGCAAAAAGCTACAGGTACATGGTAAAGGGACAAATC
TGTTAACTGGAATAATTTTCTGCGAAAAATGTGGTGCAGCATATGCAGCTTCAAATACAACCAACACACTCAAAGACGGT
ACTAAAAAACGCATTCGGTATTATTCATGTAGTAACTTTCGCAACAAAGGATCAAAGGTATGTTCAGCCAATAGTGTTAG
AGCTGATGTTATCGAAAAGTATGTTATGGATCAAATACTCGAAATAGTCAAAAGTGATAAAGTTCTCAAGCAAGTTGTCG
AACGTGTTAATCAAGAAAATCAAATCGATGTAGCTTCACTTAACCATGATATTGCTTATAAACAACAACAATTTGATGAA
ATTAACACTAAACTTAAAAATCTAATTCAAACCATCGAAGACAATCCAGACTTAACATCTGCACTCAAACCAACCATTCA
TCAATATGAAACACAACTGAATGACATTACAAATCAAATTAATCAGCTCAAGCACCAACAAAACCAAGAAAAACCATCTT
ACGATACGAAGCAAATCGCTGCCCTATTACAACAAATATTTCAAAACGTAGAATCAATGGATAAAGCACAACTCAAAGCA
TTATACCTTACGGTCATTGATCGTATCGATATTCGTAAAGACGGTAATCATAAAAAACAGTTCTACGTTACACTCAAACT
CAATAATGAAATTATTAAACAACTTTTCAATGATACCCCACTCGACGAAGTGCTCCTCAGCACTTCGTCTTTATTTTTGC
CTCAAACGCTCTTTCTTCAAATCTAA

Domains

Predicted by InterproScan.

• Recombinase zinc beta ribbon domain (Zn_ribbon_recom) (294-359)

• Recombinase (Recombinase) (179-279)

• Resolvase, N terminal domain (Resolvase) (11-154)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ccrB	Staphylococcus aureus N315	78.044	100	0.782